Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1843 |
Symbol | |
ID | 6161797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1992437 |
End bp | 1994107 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641664605 |
Product | long-chain-fatty-acid--CoA ligase |
Protein accession | YP_001790875 |
Protein GI | 171058526 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCGT TGACCGCCCG TTCGTCCGGC CCGATGCCGG GCCGCATGAT GCAGATGCCG CTGCTGATCT CGAGCCTGCT GGTGCACGCC GCCCGCCATG CGGCCGACAC CGAGATCGTC TCCAAGCGGG TCGAGGGCGA TCTGCACCGC AGCACCTGGC GCGACGCCGA GCGGCGCAGC CGCCAGGTGG CGCAGGTGCT CGACGCGCTC GGCTGCGAGC CCGGCGACCG CATCGGCACG CTGGCCTGGA ACGGCTACCG CCACCTCGAG ATCTACTACG GCTGCTCGGG CTCGCAGCGC GTCTGCCACA CCATCAACCC GCGGCTGTTC CCCGACCAGA TCGCCTGGAT CGTCAACGAC GCTGCCGACC GCGTGTTGTG TTTCGACCTG ACCTTTTTGC CGCTGGTCGA GAAGCTCGCG CCAGCGCTCG AATCGGTGCG CCACTTCGTG CTGATGACCG ACCGCGCGCA CATGCCGGCC AGCACCTCGA TCGAGTCGCT CAAGTGCTAC GAGGACCTGG TCGAGGCGCA GAACGGCGCC TACGCCTGGC CCAGCTTCGA CGAAAACACC GCGTCGAGCC TCTGCTACAC CTCGGGCACC ACCGGTCACC CGAAGGGCGC CGTCTACAGC CACCGCTCGA CCGTGCTGCA CGCCTACGGC GCGGCGCTGC CCGATGCCAT GGGCTGCTCG TCGGCCGACG TCATCCTGCC GGTGGTGCCG ATGTTCCACG TCAACGCCTG GGGCCTGCCC TATGCCGCCG CGCTGGTCGG CGCCAAGCTG GTGTTGCCGG GGCCGCACCT CGACGGCAAG TCGCTGCACG AGCTGTTCGA GGGCGAACAG GTCACCTTCA GCGCCGGCGT GCCGACGGTC TGGCTCGGCC TGATCAATCA CATGAAGGCG AACGGCCTCA AGTTCAGCAG CTTCAAGCGC ACGGTGATCG GCGGCTCGGC CTGCCCGCCG GCCATGATGC GCACGCTCGA ACAGGATTTC GGCGTCGAGG TGATCCACGC CTGGGGCATG ACCGAGATGT CGCCGCTGGG CACGCTGTCC AAGCTCAAGG CCAAGCACCA GGCGCTCGAC CCGCAGGCCC GCCACCACCT GCTCGAAAAA CAGGGCCGCG TCATCTACGG CGTCGACATG GCCATCGTCG GCGACGACGG CCGGGCGCTG CCCTGGGACG GCAAGGCCAG CGGCGACCTG CTGGTGCGCG GCCCGTGGGT CATCAGCAGC TACTTCGGCC GCGACGACAG CCCACTGCGC CGACTCGACG GCCAGGACTG GTTCCCGACC GGCGACGTCG CCACCATCGA CGCCGACGGC TTCATGCAGA TCACCGACCG CAGCAAGGAC GTCATCAAAT CAGGCGGCGA GTGGATCAGC TCGATCGAAC TCGAGAACAT CGCGATGGCC CACCCCGGCG TCTACGAAGC CGCCGTGATC GCCTGCAAGC ACCCGAAGTG GGACGAGCGC CCGCTGCTGG TGGTGGTGCG CAAACCCGGC GTCGACCTCA GCCGCGAGGA GATGCTCGCT TTCTACGAGG GCCGCATCGC CAAGTGGCAG GCGCCGGATG ATGTGGTGTT TGTCGACGAA CTGCCGCATA CCGCTACGGG CAAGCTGTTG AAGATCAGGC TGCGGGAGAT GTTCAAGGGG CATGTGCTGC CGGGGGGCTG A
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Protein sequence | MSPLTARSSG PMPGRMMQMP LLISSLLVHA ARHAADTEIV SKRVEGDLHR STWRDAERRS RQVAQVLDAL GCEPGDRIGT LAWNGYRHLE IYYGCSGSQR VCHTINPRLF PDQIAWIVND AADRVLCFDL TFLPLVEKLA PALESVRHFV LMTDRAHMPA STSIESLKCY EDLVEAQNGA YAWPSFDENT ASSLCYTSGT TGHPKGAVYS HRSTVLHAYG AALPDAMGCS SADVILPVVP MFHVNAWGLP YAAALVGAKL VLPGPHLDGK SLHELFEGEQ VTFSAGVPTV WLGLINHMKA NGLKFSSFKR TVIGGSACPP AMMRTLEQDF GVEVIHAWGM TEMSPLGTLS KLKAKHQALD PQARHHLLEK QGRVIYGVDM AIVGDDGRAL PWDGKASGDL LVRGPWVISS YFGRDDSPLR RLDGQDWFPT GDVATIDADG FMQITDRSKD VIKSGGEWIS SIELENIAMA HPGVYEAAVI ACKHPKWDER PLLVVVRKPG VDLSREEMLA FYEGRIAKWQ APDDVVFVDE LPHTATGKLL KIRLREMFKG HVLPGG
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