Gene Lcho_1843 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1843 
Symbol 
ID6161797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1992437 
End bp1994107 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content68% 
IMG OID641664605 
Productlong-chain-fatty-acid--CoA ligase 
Protein accessionYP_001790875 
Protein GI171058526 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCCGT TGACCGCCCG TTCGTCCGGC CCGATGCCGG GCCGCATGAT GCAGATGCCG 
CTGCTGATCT CGAGCCTGCT GGTGCACGCC GCCCGCCATG CGGCCGACAC CGAGATCGTC
TCCAAGCGGG TCGAGGGCGA TCTGCACCGC AGCACCTGGC GCGACGCCGA GCGGCGCAGC
CGCCAGGTGG CGCAGGTGCT CGACGCGCTC GGCTGCGAGC CCGGCGACCG CATCGGCACG
CTGGCCTGGA ACGGCTACCG CCACCTCGAG ATCTACTACG GCTGCTCGGG CTCGCAGCGC
GTCTGCCACA CCATCAACCC GCGGCTGTTC CCCGACCAGA TCGCCTGGAT CGTCAACGAC
GCTGCCGACC GCGTGTTGTG TTTCGACCTG ACCTTTTTGC CGCTGGTCGA GAAGCTCGCG
CCAGCGCTCG AATCGGTGCG CCACTTCGTG CTGATGACCG ACCGCGCGCA CATGCCGGCC
AGCACCTCGA TCGAGTCGCT CAAGTGCTAC GAGGACCTGG TCGAGGCGCA GAACGGCGCC
TACGCCTGGC CCAGCTTCGA CGAAAACACC GCGTCGAGCC TCTGCTACAC CTCGGGCACC
ACCGGTCACC CGAAGGGCGC CGTCTACAGC CACCGCTCGA CCGTGCTGCA CGCCTACGGC
GCGGCGCTGC CCGATGCCAT GGGCTGCTCG TCGGCCGACG TCATCCTGCC GGTGGTGCCG
ATGTTCCACG TCAACGCCTG GGGCCTGCCC TATGCCGCCG CGCTGGTCGG CGCCAAGCTG
GTGTTGCCGG GGCCGCACCT CGACGGCAAG TCGCTGCACG AGCTGTTCGA GGGCGAACAG
GTCACCTTCA GCGCCGGCGT GCCGACGGTC TGGCTCGGCC TGATCAATCA CATGAAGGCG
AACGGCCTCA AGTTCAGCAG CTTCAAGCGC ACGGTGATCG GCGGCTCGGC CTGCCCGCCG
GCCATGATGC GCACGCTCGA ACAGGATTTC GGCGTCGAGG TGATCCACGC CTGGGGCATG
ACCGAGATGT CGCCGCTGGG CACGCTGTCC AAGCTCAAGG CCAAGCACCA GGCGCTCGAC
CCGCAGGCCC GCCACCACCT GCTCGAAAAA CAGGGCCGCG TCATCTACGG CGTCGACATG
GCCATCGTCG GCGACGACGG CCGGGCGCTG CCCTGGGACG GCAAGGCCAG CGGCGACCTG
CTGGTGCGCG GCCCGTGGGT CATCAGCAGC TACTTCGGCC GCGACGACAG CCCACTGCGC
CGACTCGACG GCCAGGACTG GTTCCCGACC GGCGACGTCG CCACCATCGA CGCCGACGGC
TTCATGCAGA TCACCGACCG CAGCAAGGAC GTCATCAAAT CAGGCGGCGA GTGGATCAGC
TCGATCGAAC TCGAGAACAT CGCGATGGCC CACCCCGGCG TCTACGAAGC CGCCGTGATC
GCCTGCAAGC ACCCGAAGTG GGACGAGCGC CCGCTGCTGG TGGTGGTGCG CAAACCCGGC
GTCGACCTCA GCCGCGAGGA GATGCTCGCT TTCTACGAGG GCCGCATCGC CAAGTGGCAG
GCGCCGGATG ATGTGGTGTT TGTCGACGAA CTGCCGCATA CCGCTACGGG CAAGCTGTTG
AAGATCAGGC TGCGGGAGAT GTTCAAGGGG CATGTGCTGC CGGGGGGCTG A
 
Protein sequence
MSPLTARSSG PMPGRMMQMP LLISSLLVHA ARHAADTEIV SKRVEGDLHR STWRDAERRS 
RQVAQVLDAL GCEPGDRIGT LAWNGYRHLE IYYGCSGSQR VCHTINPRLF PDQIAWIVND
AADRVLCFDL TFLPLVEKLA PALESVRHFV LMTDRAHMPA STSIESLKCY EDLVEAQNGA
YAWPSFDENT ASSLCYTSGT TGHPKGAVYS HRSTVLHAYG AALPDAMGCS SADVILPVVP
MFHVNAWGLP YAAALVGAKL VLPGPHLDGK SLHELFEGEQ VTFSAGVPTV WLGLINHMKA
NGLKFSSFKR TVIGGSACPP AMMRTLEQDF GVEVIHAWGM TEMSPLGTLS KLKAKHQALD
PQARHHLLEK QGRVIYGVDM AIVGDDGRAL PWDGKASGDL LVRGPWVISS YFGRDDSPLR
RLDGQDWFPT GDVATIDADG FMQITDRSKD VIKSGGEWIS SIELENIAMA HPGVYEAAVI
ACKHPKWDER PLLVVVRKPG VDLSREEMLA FYEGRIAKWQ APDDVVFVDE LPHTATGKLL
KIRLREMFKG HVLPGG