Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1838 |
Symbol | |
ID | 6160606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1988376 |
End bp | 1989203 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641664600 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001790870 |
Protein GI | 171058521 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGT CATCGTTTGC CCTGCGCACC GTCGTGCGCG CCGCCTCTGC CGCAGCGCTG ACCGTGGCCC TGCTGCCCAC GATCGCCCAG GCTCAGAACA TCGCCATCGT CAATGGCAAG GGCGTGCCGA CCGCGCGTTT CGATTCGTTC ATGACGCAGG TCACCAAGCA GGGGAACCAG CCGCGCACCG CCGAGCTGGA GCGCCAGGTC AAGGACGAGC TGGTGCTGCG CGAGATCTTC GTGCAGGAAG CCGAAAAGCG CGGCCTGCAG AAGAACAGCG AGTACCGCAC CCAGATGGAG ATCGCGCGCC AGAGCCTGCT GATCCGCGAG CTGTTCAACG AGTACCAGAA GAAGAACCCG GTCACCGACG CCGAGATCAA GGCCGAGTAC GACAAGGTCA AGTCGGGCGC GGGCGAGAAG GAATACCACG CCAAGCACAT CCTGGTCGAG AAGGAAGACG AAGCCAAGGC GCTGATCGCC GAGCTCAAGG GCGGCGCCAA GTTCGACGAG CTGGCCAAGA AGGCGTCGAA GGATCCGGGC TCGGCCCAGA ACGGCGGCGA CCTCGACTGG GCCGCGCCGG CCAACTACGT GCCCGAGTTC TCGCAGGCGA TGGTCAAGCT CGAAAAGGGC AAGTACACCG AGACCGCGGT GAAGAGCCAG TTCGGCTACC ACATCATCCT GCTCGACGAC GTGCGTGAAG CGCAGTTCCC GCCGCTGGAA GAAGTCAAGG CGCAGCTCGA GCAACGCCTG GCGCAGCAGA AGATGGGCAA GTACCGCGAA GAACTGCGGT CCAAGGCCAA GACCGACTAC AAGTTCACCG GCCAGTGA
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Protein sequence | MKKSSFALRT VVRAASAAAL TVALLPTIAQ AQNIAIVNGK GVPTARFDSF MTQVTKQGNQ PRTAELERQV KDELVLREIF VQEAEKRGLQ KNSEYRTQME IARQSLLIRE LFNEYQKKNP VTDAEIKAEY DKVKSGAGEK EYHAKHILVE KEDEAKALIA ELKGGAKFDE LAKKASKDPG SAQNGGDLDW AAPANYVPEF SQAMVKLEKG KYTETAVKSQ FGYHIILLDD VREAQFPPLE EVKAQLEQRL AQQKMGKYRE ELRSKAKTDY KFTGQ
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