| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1779 |
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| Symbol | |
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| ID | 6162817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1922098 |
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| End bp | 1923276 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664541 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001790811 |
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| Protein GI | 171058462 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000000205301 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCACC GAGCTCAACA CCCGACCCGC CTGGCCCGCC GCCTGCTCGC CCTCGCGCTG
CTGCCGCTGG CCGGTGCGAC GATCGCGCAG GAAAAGATCA AGGTCGGCCT GATGCTGCCC
TACACCGGCA CCTACGCCGC ACTCGGCGTG GCGATCGAGA ACGGCTTTCG CCAGTACCTC
GACGAACAGG GTGGCCAGCT CGGTGGCCGG CAGGTCGAGT TCTTCAAGGT CGACGACGAG
TCCGACCCGG CCAAGGCATC CGACAACGCC AACAAGCTGG TCAAGCGCGA CCAGGTCGAC
GTCATGGTCG GCAGCGTGCA CTCGGGCGTG GCGATGGCGA TGGCCAAGGT CGCCAAGGAC
AACAACACCC TGCTGATCGT GCCCAACGCC GGCGCCGATG CCGTCACCGG CGCGCTGTGC
GCGCCCAACA TCTTCCGCAG TTCGTTCAGC AACTGGCAGC CGGGTTACGC CATCGGCAAG
GTGGCCGGCG AGCGCAAGTT CAAGACCGCC GTCACGCTGA CCTGGAAATA CGCCGCCGGC
GACGAGACCG TGCGCGGCTT CAAGGAGGCC TTCGAGGGCG GTGGCGGCAA GGTCGTGAAG
GAACTCAACC TGGCGTTCCC GACGGTCGAG TTCCAGGCCC TGCTGACCGA GGTGGCGGCG
CTCAAGCCCG ACGTCGCGTT CGTCTTCTTC GCCGGCGCCG GCGCGGTCAA GTTCGTCAAG
GACTGGCAGG CCGCCGGCCT GAAGGACAGG ATCCCGCTCT ACGCCTCGGG TTTCCTGACC
GACGGCACGC TCGAGGCGCA GGGCGACGCC GCCCAGGGCA TCGTCACCGC GCTGCACTAT
GCCGACGACC TGAGCAACAA GCGCGACCAG GCCTTCCGCC TGCAGTACGC CAAGACCTAC
AAGCTGCAGC CCGACGTCTA CGCCGTGCAG GGCTACGACG CGGCGCAGCT GCTGGGCGCC
GGGCTCACCG CGGTCAAGGG CGACATCAAG AACCGCGACG GCCTGGTCAA GGCGATGGAA
GCGGCCCGGA TCGACAGCCC GCGCGGCCCG TTCACCTTGA GCCGCGCCCA CAACCCGGTG
CAGGATTTCT ACCTGCGCCA GGTGGTCGGC AAGGCCAACA AGGCGATCGG CGTGGCCGCC
AAGGGCCTGG CCGATCCGGC GCGCGGCTGC AAGATGTGA
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| Protein sequence | MNHRAQHPTR LARRLLALAL LPLAGATIAQ EKIKVGLMLP YTGTYAALGV AIENGFRQYL
DEQGGQLGGR QVEFFKVDDE SDPAKASDNA NKLVKRDQVD VMVGSVHSGV AMAMAKVAKD
NNTLLIVPNA GADAVTGALC APNIFRSSFS NWQPGYAIGK VAGERKFKTA VTLTWKYAAG
DETVRGFKEA FEGGGGKVVK ELNLAFPTVE FQALLTEVAA LKPDVAFVFF AGAGAVKFVK
DWQAAGLKDR IPLYASGFLT DGTLEAQGDA AQGIVTALHY ADDLSNKRDQ AFRLQYAKTY
KLQPDVYAVQ GYDAAQLLGA GLTAVKGDIK NRDGLVKAME AARIDSPRGP FTLSRAHNPV
QDFYLRQVVG KANKAIGVAA KGLADPARGC KM
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