Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1755 |
Symbol | |
ID | 6160320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1882406 |
End bp | 1884349 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664517 |
Product | TPR repeat-containing protein |
Protein accession | YP_001790787 |
Protein GI | 171058438 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0455441 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCCAAG CGGCGCAAGC GGTCGTCACG GGTGTCGAGC AGGAGCCACC GGCAGCCCCG GCCCGGCCGG TGGTCGACCG CGCCCTGCTG ATCCAGGGCA TCGAGCTGCA GAACCAGGGT CAGCTCGACC CGGCGCAGCG CATCTTCGAG CTCTACCTCG ACCACCATCC GGCTGATCCT GCGGCGCTCT ATTCGCTGGC GGTGATCCTG CTCAAGCGAC CCGAGTCCGG CAAGGCGCGG GCGCTGCTCG ACCGTGCCGT GCAACTGGCA CCGCACTTCG CGCCGCTGTG GTTCGCGCAC GGCACCGCGC TGCAAGGCGC GGGCGAGCGC GAAGCGGCGT TGCAGAGCCT CGACCGCGCG CTGGCCATCC AGCCCGACTA CACCGAGGTG CTGATCAACT CCGGCGTGCT GCTGCGCGAG TTGCTGCGCC ACGCCGAGGC GCTGCAGCGT TTTCAGCGTG TGCTTGAGAT CAAGCCGCAG CACGAGACCG CGCTGGCCAA CTGCGCCGTG CTGCTGACCG ATTTCAAGCG CAGCGAAGAG GCCACCGCGA TGTTCGAGCG CCTGCTCGCC ATCAACCCCG ATTACGACTA CGGCCTGGGC ATGCTCTGCT ACGAGCGCCT GCACCGCTGC GACTGGACCG ATTTCGACGC CAGCGCCGAC GCCATCCTGG CCGGCGTGCG CGAGGGCCGG CGCAGCAGCA AGTCGCTTGC CGTGATGGCC TTGAGCGACT CTGCCGCCGA CCACCAGACC TGCGCCCGCA CCTTTTCCGC GCACCGCTAT CCGCCCAGCG CCCAGCCGCT GTGGCGCGGC GAGCGCTACC GGCACGACCG CATCCGCATC GCCTACGTCT CGCCGGACCT GCGCGAGCAC CCGGTGGGCC ACCTGATGGC GGGCATCTTC GAGCGCCACG ACAAGAACCG CTTCGAGACC ATCGCGATCT CGCTGGGCAT CGACGACGGC AGCCGGCTGC GCTCGCGCAT GCTGGCGAGC TTCGACCACT TCATCGACGC GCGGCTGATG GGTTCGCGCC AGATCGCCAG CAGGATGCGC GAGATGGAGG TCGACATCGC CATCGACCTG GCCGGCTACA CCGCCGACTC GCGCAGCGAG ATCTTCGCCG AGCGGCCCGC GCCGGCGCAG GTCAACTACC TCGGCTACCC CGGCACGCTG GGTAACGGCT ACATGGACTA CATCGTGGCC GACCGCCACG TGATCCCGCC CGAACACCAG GGCTTCTACG ACGAGCGGGT GGTCTACCTG CCCGACAACT ACCTGCCCGC CGCGTCGGGC GTGCAGATCG CCGAACGCAC GCCCAGCCGC ACCGAATGCG GCCTGCCCGA GAGCGGGCTG GTGTTCTGCT CGTTCAACCA CGACTACAAG ATCTCGCCGC ACATCTTCGC GGCCTGGATG CGCATCCTCG CCGCCACGCC GGGCAGCGTC CTGTGGCTGA TGTCGCGCGG CGCCGCCTCG CAGCGCAACC TGCGCGCGGC CGCACAGGCG CAGGGCGTGG CGCCCGAGCG GCTGGTATTT GCGCAGCGCG TGCCGCGGGT CGAAGACCAC CTGGCGCGAT ACCGTCAGGC CGACCTGTTC CTGGACACCC ATCCCTACAA CGCCCACACC ACCGCCGCCG ACGCGCTGCT GGCCGGCCTG CCGGTGCTGA CCTACAGCGG CAACGCCTTT CCGGCACGCG TGGCCGGCAG CCTGCTGCAC GCGGCGGGCC TGCCCGATCT GGTCACGCAC AGCCTGTCCG ACTACGAGGC GCTGGCCGTG CGCCTGGCGC AGCAGCCCGC GCTGCTGGCC GACTGCAAGG CCCGGCTGGC GGCACAGCGC GAGCGCTGTG CGCTGCTCGA TGCCGACGGC TTCACGCGCA ACCTCGAGGC GATCTACATC GCGATGTGGC GCAACAGCCA GCTCGGCGGT GTGCGCGACG CGCTCGGTGC TTGA
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Protein sequence | MVQAAQAVVT GVEQEPPAAP ARPVVDRALL IQGIELQNQG QLDPAQRIFE LYLDHHPADP AALYSLAVIL LKRPESGKAR ALLDRAVQLA PHFAPLWFAH GTALQGAGER EAALQSLDRA LAIQPDYTEV LINSGVLLRE LLRHAEALQR FQRVLEIKPQ HETALANCAV LLTDFKRSEE ATAMFERLLA INPDYDYGLG MLCYERLHRC DWTDFDASAD AILAGVREGR RSSKSLAVMA LSDSAADHQT CARTFSAHRY PPSAQPLWRG ERYRHDRIRI AYVSPDLREH PVGHLMAGIF ERHDKNRFET IAISLGIDDG SRLRSRMLAS FDHFIDARLM GSRQIASRMR EMEVDIAIDL AGYTADSRSE IFAERPAPAQ VNYLGYPGTL GNGYMDYIVA DRHVIPPEHQ GFYDERVVYL PDNYLPAASG VQIAERTPSR TECGLPESGL VFCSFNHDYK ISPHIFAAWM RILAATPGSV LWLMSRGAAS QRNLRAAAQA QGVAPERLVF AQRVPRVEDH LARYRQADLF LDTHPYNAHT TAADALLAGL PVLTYSGNAF PARVAGSLLH AAGLPDLVTH SLSDYEALAV RLAQQPALLA DCKARLAAQR ERCALLDADG FTRNLEAIYI AMWRNSQLGG VRDALGA
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