Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1741 |
Symbol | |
ID | 6163278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1859793 |
End bp | 1861118 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664501 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001790773 |
Protein GI | 171058424 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000206707 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGCCGAC TGCTGGACAT CGACACCGCT CTCGCGAGCG ACTCGTACTA CGCCGCCACG GCGATCCGTG ACCACCACTG GCCGGTGTTC GACGGCGATC TGCGCTGCGA CGTGGCGGTG GTCGGCGGCG GGTTGGCCGG GCTGTCGGCT GCGCTGGAGC TGGCCGAACG GGGCCACCAG GTGGTGCTGC TCGAAGCCCA GCAGGTCGGC TGGGGCGCAT CCGGGCGCAA CGGCGGTCAG GCCATCCACG GGCTGGCCTG CGATCAGACC GAGATCGAGC AGCAGCTCGG CCTGCGCGCG GCGCGCCAGG TCTGGGACAT GAGCCTGGAG GCGATCGACC TGATCGGCCA GCGCTGCCAG CGCCACCGCA TCGACTGCGA CTGGCAGAGC GGCTACCTGA GCCTGGCCAC CAACGTGCGC AAGGCCAGCG AGCTCAAGAC CTGGGTCGAG CGCATGGCGC GGGTCTACGA ACACGCGTTC CAATGGATCG CACGCCAGGA ACTCGAACAC TGGATCCACA GCCCGCGCTA CTACGCCGGC ATCCACGACC CGCGATCGGG CCACCTGCAC CCGCTCAAGT ACGCGCTCGG CCTGGCTCGG GCGGCCAGTG CAGCGGGCGT GCGCATCTAC GAAAGCAGCG CGGTGACCCG GCTCGAACGC GGCCAGCCCG CCACGCTGCA CACCGCCCGC GGCAAGGTGG TGGCCGATCA GGTGCTGCTG GCCGGCAACG TCCACCAGCA GGGCCTGGCG CCCGAACTCG AGCCGCGCAT CATGCCGGTG GGCACCTACA TCGCCTGCAC CGAACGCCTG CCGGCCGAGC TGCTGGCCGA CCTGCTGCCC ACCCGCGCGG CGGTCTGCGA CACCAACTTC GTGCTCGACC ACTTCCGCCC CACCGCCGAC CACCGGCTGC TCTACGGCGG GCGCGTCAGC TACAGCATGT TCACGCCGCG CCGGCTGGCC GAGTCGATGA AGGCGCGCAT GGTGCGCACG TTCCCGGGCC TGAGCGAGGT GCGCATCGCC CACGCCTGGG GCGGCTTCGT CGACATCAGC ATGAACCGCG CGCCCGATTT CGGCCGTCTG CCAGGTGTCG GCACCGATCG CGCGGCGCGC ACGCCCAACG TCTACTACCT GCAGGGCTTC TCGGGCCACG GGCTGGCGCT GACCGGTCTG GCCGGCAAGC TGGTGGCGCA GGCAATCAGC GGCGACAGTT CGCGCTTCGA CGTGTTCGCG CGCATCAAGC ACCGGCCGTT TCCGGGCGGG CGCTGGCTGC GCATGCCGTC GCTGGTGCTG GGCATGGCCT GGTATCGCCT GAAGGACCTG CTCTGA
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Protein sequence | MGRLLDIDTA LASDSYYAAT AIRDHHWPVF DGDLRCDVAV VGGGLAGLSA ALELAERGHQ VVLLEAQQVG WGASGRNGGQ AIHGLACDQT EIEQQLGLRA ARQVWDMSLE AIDLIGQRCQ RHRIDCDWQS GYLSLATNVR KASELKTWVE RMARVYEHAF QWIARQELEH WIHSPRYYAG IHDPRSGHLH PLKYALGLAR AASAAGVRIY ESSAVTRLER GQPATLHTAR GKVVADQVLL AGNVHQQGLA PELEPRIMPV GTYIACTERL PAELLADLLP TRAAVCDTNF VLDHFRPTAD HRLLYGGRVS YSMFTPRRLA ESMKARMVRT FPGLSEVRIA HAWGGFVDIS MNRAPDFGRL PGVGTDRAAR TPNVYYLQGF SGHGLALTGL AGKLVAQAIS GDSSRFDVFA RIKHRPFPGG RWLRMPSLVL GMAWYRLKDL L
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