Gene Lcho_1741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1741 
Symbol 
ID6163278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1859793 
End bp1861118 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content71% 
IMG OID641664501 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001790773 
Protein GI171058424 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000206707 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCCGAC TGCTGGACAT CGACACCGCT CTCGCGAGCG ACTCGTACTA CGCCGCCACG 
GCGATCCGTG ACCACCACTG GCCGGTGTTC GACGGCGATC TGCGCTGCGA CGTGGCGGTG
GTCGGCGGCG GGTTGGCCGG GCTGTCGGCT GCGCTGGAGC TGGCCGAACG GGGCCACCAG
GTGGTGCTGC TCGAAGCCCA GCAGGTCGGC TGGGGCGCAT CCGGGCGCAA CGGCGGTCAG
GCCATCCACG GGCTGGCCTG CGATCAGACC GAGATCGAGC AGCAGCTCGG CCTGCGCGCG
GCGCGCCAGG TCTGGGACAT GAGCCTGGAG GCGATCGACC TGATCGGCCA GCGCTGCCAG
CGCCACCGCA TCGACTGCGA CTGGCAGAGC GGCTACCTGA GCCTGGCCAC CAACGTGCGC
AAGGCCAGCG AGCTCAAGAC CTGGGTCGAG CGCATGGCGC GGGTCTACGA ACACGCGTTC
CAATGGATCG CACGCCAGGA ACTCGAACAC TGGATCCACA GCCCGCGCTA CTACGCCGGC
ATCCACGACC CGCGATCGGG CCACCTGCAC CCGCTCAAGT ACGCGCTCGG CCTGGCTCGG
GCGGCCAGTG CAGCGGGCGT GCGCATCTAC GAAAGCAGCG CGGTGACCCG GCTCGAACGC
GGCCAGCCCG CCACGCTGCA CACCGCCCGC GGCAAGGTGG TGGCCGATCA GGTGCTGCTG
GCCGGCAACG TCCACCAGCA GGGCCTGGCG CCCGAACTCG AGCCGCGCAT CATGCCGGTG
GGCACCTACA TCGCCTGCAC CGAACGCCTG CCGGCCGAGC TGCTGGCCGA CCTGCTGCCC
ACCCGCGCGG CGGTCTGCGA CACCAACTTC GTGCTCGACC ACTTCCGCCC CACCGCCGAC
CACCGGCTGC TCTACGGCGG GCGCGTCAGC TACAGCATGT TCACGCCGCG CCGGCTGGCC
GAGTCGATGA AGGCGCGCAT GGTGCGCACG TTCCCGGGCC TGAGCGAGGT GCGCATCGCC
CACGCCTGGG GCGGCTTCGT CGACATCAGC ATGAACCGCG CGCCCGATTT CGGCCGTCTG
CCAGGTGTCG GCACCGATCG CGCGGCGCGC ACGCCCAACG TCTACTACCT GCAGGGCTTC
TCGGGCCACG GGCTGGCGCT GACCGGTCTG GCCGGCAAGC TGGTGGCGCA GGCAATCAGC
GGCGACAGTT CGCGCTTCGA CGTGTTCGCG CGCATCAAGC ACCGGCCGTT TCCGGGCGGG
CGCTGGCTGC GCATGCCGTC GCTGGTGCTG GGCATGGCCT GGTATCGCCT GAAGGACCTG
CTCTGA
 
Protein sequence
MGRLLDIDTA LASDSYYAAT AIRDHHWPVF DGDLRCDVAV VGGGLAGLSA ALELAERGHQ 
VVLLEAQQVG WGASGRNGGQ AIHGLACDQT EIEQQLGLRA ARQVWDMSLE AIDLIGQRCQ
RHRIDCDWQS GYLSLATNVR KASELKTWVE RMARVYEHAF QWIARQELEH WIHSPRYYAG
IHDPRSGHLH PLKYALGLAR AASAAGVRIY ESSAVTRLER GQPATLHTAR GKVVADQVLL
AGNVHQQGLA PELEPRIMPV GTYIACTERL PAELLADLLP TRAAVCDTNF VLDHFRPTAD
HRLLYGGRVS YSMFTPRRLA ESMKARMVRT FPGLSEVRIA HAWGGFVDIS MNRAPDFGRL
PGVGTDRAAR TPNVYYLQGF SGHGLALTGL AGKLVAQAIS GDSSRFDVFA RIKHRPFPGG
RWLRMPSLVL GMAWYRLKDL L