Gene Lcho_1704 details

Gene Information

• Locus tag: Lcho_1704
• ID: 6162648
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1820684
• End bp: 1822504
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641664464
• Product: GTP-binding protein TypA
• Protein accession: YP_001790736
• Protein GI: 171058387
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.0000025376
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACCAAGC AAATCCGCAA CATCGCCATC ATCGCCCACG TCGACCATGG CAAGACCACC 
ATGGTGGACC AACTCCTGCG TCAGAGCGGC ACCTTCGCCG AGCACGAGAA GGTCGTCGAC 
ACCGTGATGG ACAGCAACGC CATCGAACGC GAGCGTGGCA TCACCATCCT GGCCAAGAAC 
TGCGCCGTGA GCTGGGAAGG CACGCACATC AACATCGTCG ACACCCCCGG ACACGCCGAC 
TTCGGCGGCG AGGTCGAGCG CGCGCTGTCG ATGGTCGACG GCGTGGTGCT GCTGATCGAT 
GCGCAGGAAG GCCCGATGCC CCAGACCCGC TTCGTGACCA AGAAGGCGCT CGCCCTCGGT 
CTGAAGCCGA TCGTGGTGGT CAACAAGGTC GACAAGCCGG GTGCCAAGCC CGACTTCGTC 
GTCAACGCCG CTTTCGACCT GTTCGACAAG CTCGGCGCCA CCGACGAGCA GCTCGACTTC 
CCCGTCGTCT ACGCCTCGGG CATCAACGGC TGGTCGTCGC TCGAAGAAGG TGCGCCCGGC 
GAGAAGTGGG GCGAGGACAT GTCCGCCCTG TTCAACACCG TGCTCAAGCA CGTGCAGCCG 
CACGCCGGTG ACGCCGCCGC GCCGCTGCAG CTGCAGATCT CCGCGCTCGA CTACTCGACC 
TTCGTCGGCC GCATCGGCGT GGGCCGCATC AACGCCGGCA CCATCAAGCC GGGCATGGAC 
GTGCTGGTCT GCGAAGGCAC CGACGGCAAG ACCGTCAAGG GCCGCGTCAA CCAGGTGCTG 
ACCTTCCAGG GCCTGGACCG CGTGCAGGTG ACCGAAGCCG GCCCGGGCGA CATCGTGCTG 
ATCAACGGCA TCGACGCGCT GGGCATCGGC GTGACCGTGA CCGACCCGCA GAACCCGGCA 
CCGCTGCCGA TGCTCAAGGT CGACGAGCCG ACGCTGACGA TGAACTTCTG CGTCAACACC 
AGCCCGCTGG CCGGCCGCGA AGGCAAGTAC GTCACCAGCC GCCAGATCTG GGACCGCCTG 
CAGAAGGAGC TGCAATCGAA CGTGGCGCTG CGCGTCTCGG AAACCAGCGA AGACGGCATC 
TTCGAGGTGA TGGGCCGCGG TGAACTCCAC CTGACGATCC TGATCGAGAA CATGCGCCGC 
GAAGGCTACG AGCTGGCCGT GTCCAAGCCG CGCGTGGTGT TCCACGACGT CAACGGCGAG 
AAGCACGAGC CGATCGAACT GGTCACCGCC GACGTCGAAG AGACCCACCA GGGCGGCGTG 
ATGCAGGCGC TGGGCGAGCG CAAGGGCGAA CTGGTCAACA TGGAGCCGGA CGGCCGTGGC 
CGCGTGCGCC TCGAGTACCG CATCCCGGCG CGGGGCCTGA TCGGTTTTTC CAACGAGTTC 
ATGAACCTGA CGCGGGGTTC GGGCCTGATC TCGAACATCT TCGAAGGCTA CGAGCCGCAC 
AAGGGCGAGA TCGCCGGCCG CAAGAACGGC GTGCTGATCT CGATGGACGC CGGCGAGATC 
TTCACCTACG CGCTGGGCAA GCTCGACGAC CGCGGCCGCA TGTTCGTCAA GCCGAACGAT 
CCGGTGTACG AGGGCATGAT CGTCGGCATC CACAGCCGCG ACAACGACCT GGTCGTCAAC 
GCCACCCGCA CCAAGCAGCT GACCAACTTC CGCGTCAGCG GCAAGGAAGA CGCGATCAAG 
ATCACGCCGC CGATCGACCT GACGCTCGAA TACGGCGTCG AGTTCATCGA GGACGACGAG 
CTGGTCGAGA TCACGCCCAA GTCGGTGCGT CTGCGCAAGC GGTTCCTGAC CGAAAACGAA 
CGCAAGCGCG CGGGGCGCTG A 

 

Protein sequence

MTKQIRNIAI IAHVDHGKTT MVDQLLRQSG TFAEHEKVVD TVMDSNAIER ERGITILAKN 
CAVSWEGTHI NIVDTPGHAD FGGEVERALS MVDGVVLLID AQEGPMPQTR FVTKKALALG 
LKPIVVVNKV DKPGAKPDFV VNAAFDLFDK LGATDEQLDF PVVYASGING WSSLEEGAPG 
EKWGEDMSAL FNTVLKHVQP HAGDAAAPLQ LQISALDYST FVGRIGVGRI NAGTIKPGMD 
VLVCEGTDGK TVKGRVNQVL TFQGLDRVQV TEAGPGDIVL INGIDALGIG VTVTDPQNPA 
PLPMLKVDEP TLTMNFCVNT SPLAGREGKY VTSRQIWDRL QKELQSNVAL RVSETSEDGI 
FEVMGRGELH LTILIENMRR EGYELAVSKP RVVFHDVNGE KHEPIELVTA DVEETHQGGV 
MQALGERKGE LVNMEPDGRG RVRLEYRIPA RGLIGFSNEF MNLTRGSGLI SNIFEGYEPH 
KGEIAGRKNG VLISMDAGEI FTYALGKLDD RGRMFVKPND PVYEGMIVGI HSRDNDLVVN 
ATRTKQLTNF RVSGKEDAIK ITPPIDLTLE YGVEFIEDDE LVEITPKSVR LRKRFLTENE 
RKRAGR