Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1700 |
Symbol | |
ID | 6162767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1814675 |
End bp | 1816153 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641664460 |
Product | NusA antitermination factor |
Protein accession | YP_001790732 |
Protein GI | 171058383 |
COG category | [K] Transcription |
COG ID | [COG0195] Transcription elongation factor |
TIGRFAM ID | [TIGR01953] transcription termination factor NusA [TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00892855 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACCGCG AATTGTTGAT GCTGGTGGAC GCGATCTCGC GTGAGAAGAA CGTCGACCGC GAGGTGGTGT TCGGCGCTGT CGAGGCTGCG CTGGCCTCTG CCACCAAGAA GCTTTATGAA GGCGAGGTCG ACATCCGTGT CGCCGTCGAT CGTGACACCG GGGTCTACGA GACCTTCCGC CGCTGGCACG TCGTTCCCGA CGAGGCCGGT CTGCAGCTGC CCGAGGCCGA GATCCTGCAT TTCGAGGCCA AGGAACAGAT CGACGACATC GAGGTGGACG ACTACCTCGA GGAATCGGTC GAGTCGGTGC CGATCGGCCG CATCGGTGCA CAGGCTGCCA AGCAGGTGAT CCTGCAGAAG ATCCGCGACG CCGAGCGCGA GCAGCTGCTC AACGACTTCA TGTCGCGTGG CGAGAAGATC TTCGTCGGCA CCGTCAAGCG CCTCGACAAG GGCGATCTGG TGGTCGAGAG CGGGCGCGTC GAGGGCCGCC TGCGGCGCAG CGAGCTGATC CCGAAGGAAA ACCTGCGCAC CGGTGATCGC GTGCGCGCCA TCATCGTCGA GGTCGATCCG ACCCTGCGTG GTCCGCAGAT CGTGCTGTCG CGCTCGGCGC CCGAATTCAT GATCGAGCTG TTCCGCCTGG AAGTGCCCGA GATCGAACAA GGCCTGCTCG AGATCAAGAG CTGCGCGCGT GACTCCGGTT CGCGCGCCAA GATCGCCGTG GTCTCGCATG ACCGGCGCGT CGATCCGATC GGCACCTGCG TCGGCGTGCG CGGCTCGCGT GTCAATGCCG TCACCAACGA ACTGGCGGGC GAGCGGGTCG ACATCGTGCT GTGGTCGGAA GATCCGGCGC AGTTCGTGAT CGGCGCGCTG GCTCCGGCGA ACGTGCAGTC GATCGTCGTC GACGAGGAAA AGCATGCGAT GGACGTGGTG GTCGACGAGG AAAACCTCGC GATCGCGATC GGTCGCGGTG GCCAGAACGT GCGGCTGGCG TCCGAGCTGA CCGGCTGGCG CATCAACATC ATGACGGCCG AAGAATCGCA GGCCAAGCAG GCCACCGAGA GCGACTCGAT CCGCAAGCTC TTCGTCGACA AGCTCGACGT CGACGAGGAT GTGGCCGACA TCCTGATTGC CGAGGGCTTC ACCAGCCTCG AAGAAGTGGC CTACGTGCCG ATGCAGGAAA TGCTCGAGAT CGAGTCGTTC GACGAAGATA CCGTGCACGA GCTGCGCACC CGCGCCAAGG ATGCCCTGCT GACGATGGAA ATCGTCAACG AGGAGAAGGT CGACGAGGTG TCGCAGGATC TGCGTGATCT CGAGGGCCTG AATGCCGAGC TGATCGGCAA GCTCTCCGAT GGTGGCATCC ACACACGTGA CGATCTGGCC GATCTGGCTG TCGACGAGTT GACCGAAATG ACCGGCATCG ACGACAACGC CGCCAAGGCC CTGATCCTCA AGGCCCGTGA ACATTGGTTC ACGGCCTGA
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Protein sequence | MNRELLMLVD AISREKNVDR EVVFGAVEAA LASATKKLYE GEVDIRVAVD RDTGVYETFR RWHVVPDEAG LQLPEAEILH FEAKEQIDDI EVDDYLEESV ESVPIGRIGA QAAKQVILQK IRDAEREQLL NDFMSRGEKI FVGTVKRLDK GDLVVESGRV EGRLRRSELI PKENLRTGDR VRAIIVEVDP TLRGPQIVLS RSAPEFMIEL FRLEVPEIEQ GLLEIKSCAR DSGSRAKIAV VSHDRRVDPI GTCVGVRGSR VNAVTNELAG ERVDIVLWSE DPAQFVIGAL APANVQSIVV DEEKHAMDVV VDEENLAIAI GRGGQNVRLA SELTGWRINI MTAEESQAKQ ATESDSIRKL FVDKLDVDED VADILIAEGF TSLEEVAYVP MQEMLEIESF DEDTVHELRT RAKDALLTME IVNEEKVDEV SQDLRDLEGL NAELIGKLSD GGIHTRDDLA DLAVDELTEM TGIDDNAAKA LILKAREHWF TA
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