| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1683 |
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| Symbol | trpA |
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| ID | 6162478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1795711 |
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| End bp | 1796526 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664438 |
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| Product | tryptophan synthase subunit alpha |
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| Protein accession | YP_001790715 |
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| Protein GI | 171058366 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0159] Tryptophan synthase alpha chain |
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| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGCA TCGCCGCCAC CTTCGCGCGC CTGGCCGGGC AGGGCCGCAA GGCGCTGATT
CCGTATGTGA CTGCCGGCGA TCCGTTTGCC GACATCACGG TCGATCTGAT GCACGCCATG
GCCAAGGCGG GTGCCGACGT GATCGAACTG GGCGTGCCGT TTTCGGATCC GATGGCCGAT
GGCCCGGTGA TCCAGCGCGC CAGTGAACGC GCACTCTCGC GCAACATCTC CACCGCCGAC
GTGCTGGCGA TGGTGGCGCG GTTCCGCGAA ACCGACGACA CCACGCCGGT GGTGCTGATG
GGCTACGCCA ACCCGGTCGA GCGTTACGGC CCGGATCGGT TCGTCGACGA TGCGCGTGCG
GCCGGTGTCG ACGGCGTGCT GGTGGTCGAC TACCCGCCGC AGGAGTGCGA GGCGTTCGCC
GATCGCCTGC GTGCGGCCGA TCTCGACCCG ATCTTCCTGC TGGCGCCGAC CTCGACCGAT
GCCCGCATGG CCGACGTCGG CCGCATCGCC ACCGGCTACG TGTACTACGT GTCGCTCAAG
GGCGTGACCG GCTCGGGCAA CCTCGACACC GACGCGGTGG CCCGCATGAT CCCGCGCATC
CGCAGCCATG TGAGCGTGCC GGTCGGCGTG GGATTCGGCA TCCGCGACGC GGCGACGGCC
GTGGCGGTGG CCCGGGTATC GGACGCCGTG GTGATCGGTT CCCGTATCAT TCAACTGATC
GAAAACGAGC CGCGTGAGCG GGTGGTACCG GTGGCTGCCG GTTTCATCGC CGAAATTCGC
ACGGCCCTCG ACACCCTGCA AGGAACACAC GCATGA
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| Protein sequence | MSRIAATFAR LAGQGRKALI PYVTAGDPFA DITVDLMHAM AKAGADVIEL GVPFSDPMAD
GPVIQRASER ALSRNISTAD VLAMVARFRE TDDTTPVVLM GYANPVERYG PDRFVDDARA
AGVDGVLVVD YPPQECEAFA DRLRAADLDP IFLLAPTSTD ARMADVGRIA TGYVYYVSLK
GVTGSGNLDT DAVARMIPRI RSHVSVPVGV GFGIRDAATA VAVARVSDAV VIGSRIIQLI
ENEPRERVVP VAAGFIAEIR TALDTLQGTH A
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