Gene Lcho_1677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1677 
Symbol 
ID6163944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1787677 
End bp1788780 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content66% 
IMG OID641664432 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_001790709 
Protein GI171058360 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCG CAATCCTGCC GGGTGACGGC ATCGGCACCG AAATCGTCGC CGAGGCCGTC 
AAGGTCCTGA ACGTGCTCGA CCTGCCGTTC GAGATGGAAA CGGCGCTGGT CGGCGGCGCA 
GCCTACGAGG CGCACGGCCA CCCGCTGCCC GATTCGACGC TCAACCTGGC CAAGGCCGCC 
GACGCGGTGC TGTTCGGCGC CGTGGGTGAC TGGAAGTACG ACAAGCTCGA GCGCTCGCTG 
CGCCCCGAGC AGGCCATCCT GGGCCTTCGC AAGAACCTCG GGCTGTTCGC GAACTTCCGT 
CCGGCGATCT GCTACGAGCA GCTCACGCAC GCGTCGAGCC TGAAGCCCGA ACTGGTGGCG 
GGGCTCGACA TCCTGATCAT CCGCGAGCTG ACCGGCGACA TCTACTTCGG CCAGCCGCGC 
GGGCGCCGCA TCGCGGTCGA CGGGCACTTT CCGGGTGCCG AAGAAGCGTT CGACACCATG 
CGCTACAGCC GCCCCGAGAT CGAGCGCATC GCGCACGTGG CGTTCAAGGC CGCGCGCCTG 
CGCGACAAGC GTGTCACCAG TGTCGACAAG GCCAATGTGC TGGAGACCTT CCAGCTCTGG 
AAGGACGTGG TCACCGAGGT CGGCAAGGAG TACCCGGACG TGGCGCTCGA CCACATGTAC 
GTCGACAACG CCGCGATGCA ACTGGTCAAG GCGCCCAAGA AGTTCGACGT GATGGTGACG 
GGCAACATGT TCGGCGACAT CCTGTCCGAC GCGGCGGCGA TGCTGACCGG CTCGATCGGC 
ATGCTGCCGT CGGCGTCGCT GAACGCGAAC AACCAGGGCC TTTACGAGCC CAGCCACGGC 
AGTGCGCCCG ACATCGCCGG TCAGGGTATT GCAAACCCGT TGGCTACAAT CCTGTCCGCT 
GCCATGATGC TCCGCTACTC CCTCAACCAA GCACAAGCCG CCGACCGGAT CGAATCTGCG 
GTGAGCGCGG TGCTGTCTGC GGGTTACCGC ACGGTCGACA TCGCATCCGA GGGCACGACG 
CGGGTGGGCA CGCGCGAGAT GGGCGACGCC GTCGTGGCGG CGCTCACTGG CGCCACCATG 
ACCAAAACGA TTACCAAGAG CTGA
 
Protein sequence
MKIAILPGDG IGTEIVAEAV KVLNVLDLPF EMETALVGGA AYEAHGHPLP DSTLNLAKAA 
DAVLFGAVGD WKYDKLERSL RPEQAILGLR KNLGLFANFR PAICYEQLTH ASSLKPELVA 
GLDILIIREL TGDIYFGQPR GRRIAVDGHF PGAEEAFDTM RYSRPEIERI AHVAFKAARL 
RDKRVTSVDK ANVLETFQLW KDVVTEVGKE YPDVALDHMY VDNAAMQLVK APKKFDVMVT 
GNMFGDILSD AAAMLTGSIG MLPSASLNAN NQGLYEPSHG SAPDIAGQGI ANPLATILSA 
AMMLRYSLNQ AQAADRIESA VSAVLSAGYR TVDIASEGTT RVGTREMGDA VVAALTGATM 
TKTITKS