Gene Lcho_1637 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1637 
Symbol 
ID6161284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1740631 
End bp1741320 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content68% 
IMG OID641664391 
Producttransport-associated 
Protein accessionYP_001790669 
Protein GI171058320 
COG category[R] General function prediction only 
COG ID[COG2823] Predicted periplasmic or secreted lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0588013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCC CTGACCCGAC CGTCTCCTCC ACCTCGAACA CCGCCTTGAT CCACGCCACC 
GACACCCCCC AGGCCCGCCA CCCCCTGCCC CGCCTGCTCT GCACGGCGCT GGCCGCCGCC 
GCCACGGTGG CCGCACTGAG CGGATGCGCG CCGCTGATCA TCGGCGGCGC CGCGCTCGGC 
GGCGCGCTGG TCGCCACCGA CCGCCGCACC TCGGGCACCC AGATCGAGGA CCAGGGCATC 
GAGCTCAAGG CGTCCAACCG CATCAAGGAA CTGATGGGCG ACAAGGCCCA CGTCAACGTC 
ACCAGCTACG ACCGCCAGGT GCTGCTGACC GGCGAGGTCT TCAACGAGGC CGACAAGGCC 
ACCATCGAGC AGGCCGTGGC CAAGGTCGAG AACGTGCGCA ACGTCGTCAA CGACCTGTAC 
ATCGGCTGGC CCAGCTCGAC CTCCGACCGC TCGCGCGACC TGCTGCTGGC CAGCAAGGTC 
AAGGCCACGC TGGTCGACGC CAAGGACCTC TCGGCCAACG CCTTCACGGT GGTCACCGAA 
CGCAGCGTGG TCTACCTGAT GGGCAAGGTC ACCGACGCCG AAGCCAGCCG CGCGATCGAA 
CTGATCCGCA CCATCTCGGG CGTGCAGAAG GTGGTGCGCC TGCTCGAGAT CATCACGCCC 
GAACAGCTGG CCGATCGCAA GCCGAAATGA
 
Protein sequence
MNRPDPTVSS TSNTALIHAT DTPQARHPLP RLLCTALAAA ATVAALSGCA PLIIGGAALG 
GALVATDRRT SGTQIEDQGI ELKASNRIKE LMGDKAHVNV TSYDRQVLLT GEVFNEADKA 
TIEQAVAKVE NVRNVVNDLY IGWPSSTSDR SRDLLLASKV KATLVDAKDL SANAFTVVTE 
RSVVYLMGKV TDAEASRAIE LIRTISGVQK VVRLLEIITP EQLADRKPK