| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1628 |
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| Symbol | |
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| ID | 6160960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1728624 |
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| End bp | 1731713 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641664382 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001790660 |
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| Protein GI | 171058311 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00663249 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCCTGC CGCTTGCGCA GCCCGCCGCC GCGGCCTTGG TGGGCGACCG CCTGCCCTCG
CCCTTGCGCG ACGAAGCCGA GCAAGTTCAG CGCCTGCTGG GCACGCTGAC CGGCGCGGCA
GCCGCCGGCC CGCTCGACTG GAGCGCGGTG GTCGGCCGTG CCACGCCCTG GGTGGAAGCG
GTGCGCGGCA CGCCGGCGCC GTTCTGGGCG CTGGAGTCGC TGCTGCACGA CTACCCGATC
TCCAGCGCCG AGGGCCTGGC GCTGATGCGG CTGGCCGAGG CGCTGCTGCG GGTGCCCGAC
ACCGCCACCG CGATCGCGCT GACCGCCGAC CAGCTCGGCC GTGGCGACTT CAGCGCGCAC
GCGGCACACG CCGGCAGCGC GCACCCGCTG ATGGCCAGTC TGGCGGCGCG CTCGCTCGAT
TTCTCGCGCA AGCTGCTGCC CGAAGCGGGG GGCGGTCAGC CCGGCCTGCT GCAGCGCCTG
GGCGCGCAGA CCGTGGTGGC CGCCACCGTG CGCGCCATCC AGCTGCTGGG CAAGCAGTTC
GTGCTGGGCC AGAGCATCGC CGAGGCGCTC GACATCGCCC GCGCCGCCAG CCGCAAGGAG
CCCGGCCTGG TGCACAGCTT CGACATGCTC GGCGAAGGCG CCCGCACCGA TGCCGATGCG
CGGCACTACC TGGCGGCCTA CCAGGGTGCG ATCGCAGCGA TCGCCAAGCC CGGTCGGGCG
ACGTCACCGG AAAGCGCCGA CGGCATCTCG ATCAAGCTGT CGGCGCTCGA TGCGCGCTAC
GAAGCGGCGC AGTCCGCCAG CGTGTTCAAG CGCCTGCTGC CGCGCCTGAT CGCGCTGGTC
GACGCCGCGG CCGCCGCCAA CATCAACCTG ACGATCGACG CCGAGGAGAG CGAGCGGCTG
GAGCTGTCGC TGCAGGTGCT CGACGCGCTG GCCGCACACG CTGCGCGCAC GCATCCGGAT
TGGACCGGCC TGGGCCTGGC GGTGCAGGCC TACCAGACCC GCGCCAGCGA CACCGTCGCC
GCCGTGGTGC AGATCGCCCG CCAGCACCAG CGCCGGCTGA TGGTGCGGCT GGTCAAGGGC
GCGTACTGGG ACAGCGAGAT CAAGCGCGCC CAGGAACTGG GCCTCGCCGC CTACCCGGTG
TTCACCGACA AGCGCCACAC CGATCTGAGC TACCTGGCCT GCGCGCGTGC GCTGCTGGCG
GCGAGCGACT GCATCTACCC GCAGTTCGCC ACCCACAACG CCGCCACCAT CGCGGCGCTG
CTGCAGATGG CGCGTGCGCC GGGGGCGCGC TTCGAACTTC AGCGCCTGCA CGGCATGGGC
GAGGCGGTCT ACCGCGAAGT CTTGAAAGAC CTGCGCCGCA CGCCTGACGC ACCGCCGCTG
CGCATCTACG CGCCGGTCGG CGAACACCGC GACCTGCTCG CCTATCTGGT GCGCCGGCTG
CTGGAAAACG GCGCCAATTC GTCGTTCGTG CACCAGCTGG CCGACCCGAC GGTCGACGTC
ATCACGCTGC TGACCTCGCC GCTGCACGCG CCGTCGGCCA GCAGCCTGCC GCTGCCGGTG
GCGCTGTACG GCGCCGGCCG CGCCAACTCG GCCGGGCGCG ACCTGCACAT CGCCGCGCAC
CGCCTGCCGA TGATCCAGAC GCTCGCCGAG CGCGGCCGCG TCGGTCTGCC GCCGGTGAGC
GAGGCCAGCG TCGACCAGGC GCGCGAGGCC ATGCACGCGC TGCACGCCAG CCAGCCGGCC
TGGAATGCCA CGCCGCTGGC GCACCGCTGC GCCGTGCTGC AGCGTGCGGC CGATGCGCTC
GAAGCGCGCA TGGACGAGTT CGTCGCCCTG CTCGTGCACG AAGGCGGCAA GACGCTGGCC
GACGGCGTTT CCGAGGTACG CGAGGCGGTC GACTTCTGCC GCTACTACGC CGAGCAGGCC
GCCACCAAGC TGGCGCCGCA GACGCTGCCC GGCCCGACCG GCGAGAGCAA CGAGCTGCGC
CTGCACGGCC GCGGCGCCTT CGTCTGCATC AGCCCGTGGA ACTTCCCGCT GGCGATCTTC
GCCGGCCAGG TGGTGGCCGC GCTCGTCGCC GGCAACACCG TGGCGGCCAA GCCGGCCGAG
CAGACACCGG CGGTGGCGAT GGCCTTCGTG CACCTGCTGA TCCAGGCCGG CCTGCCCGAG
AACGCGATCG CGCTGCTGCA CGGCCCGGGC GAAACCGTCG GCGCCGCCCT GGTGGCGCAC
ACGCGCTGCG CGGGCGTGTG TTTCACCGGC TCGACGCAGG TGGCCCGCGC GATCAACCGC
GTGCTGGCCG AACGCGACGG CGCGATCGTG CCGCTGATCG CCGAGACCGG CGGGCTCAAC
GCGATGGTGG TCGACTCGAG CGCGCTGCCC GAGCAGGTGG TCGATGCGGT CGTGCAGAGC
GCCTTCCGCT CCGCCGGCCA GCGCTGCTCG GCGCTGCGGC TGCTGTGCGT GCACGACGAA
GTGGCCGACA AGCTGCTCGA AATGCTGTCG GGCGCGATGG CCGAACTGGT GAGCGGCGAC
CCGCGCGACG CGGCGCACAG CTGGGCCGTC GACATCGGCC CGGTGATCGA CGCCGAGGCG
CACGCGAATC TCGCCCGCCA CGTGCGCCGG CTCGACGAGA GCGCCCGCCT GATCGCCCGC
AGCGCGCTGC CGGATGCGCT GGCCGCCACC CACATCGCAC CGGTCGCCTA CGAGATCGCC
GACATCGGCG CGATGCGCGA GGAAGTCTTC GGCCCGGTGC TGCACGTCCT GCGCTGGCGC
GGCGACCCGG ACGCGCTGGT GGCGCAGATC AACGGCCTGG GCTACGGCCT GACGCTGGGC
GTGCACACCC GCATCGACGG CCGCGCGCTG CGCATCGCCG AGCAGGCGCG GGTGGGCAAC
GTCTACATCA ACCGCAACAT GATCGGCGCG GTGGTGGGCG TGCAGCCGTT CGGCGGCGAG
GGGCTGTCGG GCACCGGGCC GAAAGCCGGC GGGCCGCACT ACCTGTACCG CTTCTGCGGC
GAGCAGACGG TGACGATCAA CACCGCGGCG GCCGGCGGCA ACGCGACGCT GCTGGCGGGT
ACGGCCGCTG CGAACACGCA TGCGAACTGA
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| Protein sequence | MPLPLAQPAA AALVGDRLPS PLRDEAEQVQ RLLGTLTGAA AAGPLDWSAV VGRATPWVEA
VRGTPAPFWA LESLLHDYPI SSAEGLALMR LAEALLRVPD TATAIALTAD QLGRGDFSAH
AAHAGSAHPL MASLAARSLD FSRKLLPEAG GGQPGLLQRL GAQTVVAATV RAIQLLGKQF
VLGQSIAEAL DIARAASRKE PGLVHSFDML GEGARTDADA RHYLAAYQGA IAAIAKPGRA
TSPESADGIS IKLSALDARY EAAQSASVFK RLLPRLIALV DAAAAANINL TIDAEESERL
ELSLQVLDAL AAHAARTHPD WTGLGLAVQA YQTRASDTVA AVVQIARQHQ RRLMVRLVKG
AYWDSEIKRA QELGLAAYPV FTDKRHTDLS YLACARALLA ASDCIYPQFA THNAATIAAL
LQMARAPGAR FELQRLHGMG EAVYREVLKD LRRTPDAPPL RIYAPVGEHR DLLAYLVRRL
LENGANSSFV HQLADPTVDV ITLLTSPLHA PSASSLPLPV ALYGAGRANS AGRDLHIAAH
RLPMIQTLAE RGRVGLPPVS EASVDQAREA MHALHASQPA WNATPLAHRC AVLQRAADAL
EARMDEFVAL LVHEGGKTLA DGVSEVREAV DFCRYYAEQA ATKLAPQTLP GPTGESNELR
LHGRGAFVCI SPWNFPLAIF AGQVVAALVA GNTVAAKPAE QTPAVAMAFV HLLIQAGLPE
NAIALLHGPG ETVGAALVAH TRCAGVCFTG STQVARAINR VLAERDGAIV PLIAETGGLN
AMVVDSSALP EQVVDAVVQS AFRSAGQRCS ALRLLCVHDE VADKLLEMLS GAMAELVSGD
PRDAAHSWAV DIGPVIDAEA HANLARHVRR LDESARLIAR SALPDALAAT HIAPVAYEIA
DIGAMREEVF GPVLHVLRWR GDPDALVAQI NGLGYGLTLG VHTRIDGRAL RIAEQARVGN
VYINRNMIGA VVGVQPFGGE GLSGTGPKAG GPHYLYRFCG EQTVTINTAA AGGNATLLAG
TAAANTHAN
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