Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1617 |
Symbol | |
ID | 6163507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1715764 |
End bp | 1716996 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664371 |
Product | metal dependent phosphohydrolase |
Protein accession | YP_001790649 |
Protein GI | 171058300 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2206] HD-GYP domain |
TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.035653 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCAAAA AAATCCGCAC CGATCAGCTT CGGCTCGGCA TGTTTCTCCA CGAGCTGTGT GGCTCGTGGA TGGATCATCC CTTCTGGCGC GCCAAGTTCG TGCTCCAGGA CGCCGACGAC CTGCGCCGCC TGCGCGAGTG CGGCATCTCC GAAGTCTGGA TCGACACCGC GCTCGGGCTC GACGTGGACG GCGGCTTGTC GCAGGCCGAG GTGGCGCTGC AGGTCGAAGA AGAGCTCGAG GTGGCGGCGG TCGCCCTGCC TGCGCCGGCG CCGGTCGCGA CCTCGACACG CGACGAGCTG GCGCGGGCCG CGCTGGTCTC CGATCAGGCC AAGCTCAAGG TGCAGTCGCT GTTCGGCGAA GCGCGCATGG GCCAGGCGAT CCACGTCGAG GGCTGCCTGC CGCTGGTCGA CGACATCATC GGCTCGGTGG CGCGCAACCA GGGCGCACTC GTCAGCCTGG TGCGCCTGAA GGCGCAGGAC GAATACACCT ACATGCACTC GGTGGCGGTC TGCGCGCTGA TGGTCGCGCT GGCGCGCACC CTCAAGCTGC CTGACGACGA GGTGCGCGCC GCCGGCCTGG CGGGCCTGCT GCACGACATG GGCAAGGCGC GCATTCCGCT GGCCGTGCTC AACAAGCCCG GCCGCCTGAC GGACGACGAG TTTCGCGTCA TGAGGCAGCA CCCTGCCTGG GGCCACGACC TGCTGCTCAC CAGCGGCGAC GCGCCGGCGA TGGCGCTCGA CGTCTGCCTG CATCACCACG AGAAGGTCGA CGGCAGCGGC TATCCGCACG CCTTGAAGGC CGATCAGATC AGCCTGCATG CCCAGATGGG CGCGGTCTGC GACGTCTACG ATGCGGTGAC GTCGGCGCGC CCCTACAAGG CGCCGTGGGA CCCCGGCGAG GCGGTGCGGC AGATGGCGCA ATGGAAGGGG CACTTCAATC CGAAGGTGTT CCAGGCCTTC GTGAAGACGG TGGGCATCTA CCCGATCGGC ACGCTGGTCA AGCTGCAGTC GGGGCGGCTC GGCGTGGTCA CCGAGCAGAA CGCCGAGTCG CTGCTGACGC CGCGGGTGAA GGTGTTCTTC TCCACCAGGT CGATGCTGCC GGTGCGCCAG GAGGTGCTCG ACCTCGCCGA GCGCACCGCC GCCGACCGCA TCGTGTCGGT CGAGCAGCCC GAGAAATGGA ACTTCAAGGG CCTCGACGAC CTGTGGATCG ACGGCGCGCT GCCACGCCGC TGA
|
Protein sequence | MLKKIRTDQL RLGMFLHELC GSWMDHPFWR AKFVLQDADD LRRLRECGIS EVWIDTALGL DVDGGLSQAE VALQVEEELE VAAVALPAPA PVATSTRDEL ARAALVSDQA KLKVQSLFGE ARMGQAIHVE GCLPLVDDII GSVARNQGAL VSLVRLKAQD EYTYMHSVAV CALMVALART LKLPDDEVRA AGLAGLLHDM GKARIPLAVL NKPGRLTDDE FRVMRQHPAW GHDLLLTSGD APAMALDVCL HHHEKVDGSG YPHALKADQI SLHAQMGAVC DVYDAVTSAR PYKAPWDPGE AVRQMAQWKG HFNPKVFQAF VKTVGIYPIG TLVKLQSGRL GVVTEQNAES LLTPRVKVFF STRSMLPVRQ EVLDLAERTA ADRIVSVEQP EKWNFKGLDD LWIDGALPRR
|
| |