| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1606 |
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| Symbol | |
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| ID | 6162048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1706281 |
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| End bp | 1707030 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641664360 |
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| Product | Sec-independent protein translocase, TatC subunit |
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| Protein accession | YP_001790638 |
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| Protein GI | 171058289 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
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| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00178511 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGGGCT CCGAGCAGCC CTTCGTCAGC CACCTGATCG AGTTGCGTGA CCGGCTGCTG
AAAGCCGTCT ACGGCATCGG CGCCGTGTTT GCCGTGCTCG CGCTCTACCC CGGCCCGTCG
CGGCTCTACG ACCTGCTCGC CAGCCCGCTG GTGGCGGCGT TGCCGCAGGG CTCGAAGATG
ATCGCGGTGG GCGTCGTCTC GCCCTTCCTG ATCCCGATCA AGGTCACCGC GCTGGCCGCG
CTGGGCATCT CGCTGCCCTG GGTGCTCTAT CAGGTCTGGG CCTTCGTGGC GCCGGGCCTC
TACAAGCACG AGCAGCGGCT GGTGATGCCG CTGGTGGCCA CCAGCACGAT GCTGTTCTAC
ACCGGCGTGG CGTTCTGCTA TTTCTTCGTC TTCGGCCAGG CCTTCCCGGC GATCCAGGCG
ATGGCACCCG CGTCGGTCTC GGTGAGCCCG GACATCGAGG CCTATCTCGA CTTCGTCATC
ACGATGTTCA TCGCCTTCGG CGTGGCCTTC GAGGTGCCGG TGGCGGTGGT CATCCTGGCG
CGGCTCGGTG TCGTCACGCT CGATCAGCTG CGCAGCTTCC GGCGCTATTT CTGGGTGGCC
GCCGCCGCCG TCTCCGGCCT CGTCACGCCG CCCGACGCGG TCTCGATGAT CGCCCTGCTG
GTGCCGATGG GCCTGCTCTA CGAAGTCGGC ATCCTGGCCG CGCAGGTGTT CATCAAGCAC
ACCCAGGCAC CGGCCGAGGC GAGCGAGTGA
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| Protein sequence | MAGSEQPFVS HLIELRDRLL KAVYGIGAVF AVLALYPGPS RLYDLLASPL VAALPQGSKM
IAVGVVSPFL IPIKVTALAA LGISLPWVLY QVWAFVAPGL YKHEQRLVMP LVATSTMLFY
TGVAFCYFFV FGQAFPAIQA MAPASVSVSP DIEAYLDFVI TMFIAFGVAF EVPVAVVILA
RLGVVTLDQL RSFRRYFWVA AAAVSGLVTP PDAVSMIALL VPMGLLYEVG ILAAQVFIKH
TQAPAEASE
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