| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1602 |
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| Symbol | |
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| ID | 6162044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1700657 |
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| End bp | 1703281 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664356 |
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| Product | hypothetical protein |
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| Protein accession | YP_001790634 |
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| Protein GI | 171058285 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000566259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCCCCAC AGCCGCCCAG TTCCTCGATA GCCGCCGACA CCGCGCCCGG TGGCGCCCTG
GGCTCGGCGC CGCGCGCCGT GCGCCCGAAC CGGCCCACGC CGGTCTGGAT CCTGGCCTGG
CGCCAGTTGC GGCGCGATCT GCGCGCCGGC GAACTGCGCC TGATGCTGGT GGCGGTGGCG
CTGGCGGTGG CCGCGCTGAG CGCCGTCGGC TTCTTTGCCG ACCGGCTGCA AGGCGGCATG
AACCGCGACG CCCTGGCACT GCTGGGCGGT GACGCCGTGG TCGCCAGCGA CCAGCCGCTG
CCGGCCGACT TTGCCGCCAC CGCTGCCGAG ATGGGCCTGG CCGCGGCACG CAGCGCGACC
TTCCCGAGCA TGGCGCGCGC CGACGAGGCC CGGGGCGGCG CCGCCCGGCT GGTGTCGGTC
AAGGTGGTGG AACCCGCCTA TCCGCTGCGC GGCAGCCTGC AGATCGCCGA CACGCCGCAA
GGTGCGCCGC GCGCGGTCGG CAACGGCCCG GCCGCCGGCA CGGTGTGGGT CGACGCCGCC
GTGCTCGACG CGCTGGCGCT CGGCGTGGGC GACGCGCTGC AGCTCGGCGA CGCCCGGCTG
CGCATCGCCC AGGTGATCGT GCAGGAGCCC GATCGCGGCG CCGGTTTCAT CAACTTCGCG
CCGCGCGTGA TGCTGGCCGA CACCGATCTG GCCGCCACCG GGCTGATCCA GCCGGCCAGC
CGCGTCACCT GGCGCCTGGC GGTGGCCGCC CGCGAAGGCC GTGGCTCCGA CAGCGCGGTG
CAGGGTTTCG TGAGCTGGGC CGAGGCCCGC ATCGAAGGCC GCAAGATCCG CGGCGCGCGG
GTCGAGTCGC TCGAAGGCGC ACGACCCGAG ATGCGCCAGA CGCTCGACCG CGCCGGCCAG
TTCCTGCGCC TGGTGGCGGT GCTGGCGGCG CTGCTGGCCG CCGTGGCGGT GGGCATCGCC
GCGCGCGGAT TCGCGGCCCG ACACATCGAC GCCTGCGCGA TGCTGCGCGT GCTGGGCCTG
CCGCAGCGGC GCATCGCGGC GATCTACGGC ATCGAGATCG GCCTGGTCGG CCTGGCCGCC
AGCGTGATCG GCGTGCTGAT CGGGCTGGTC GTGCACCTGG TGTTCGTCTG GCTGCTGGCC
GGACTGGTCA ACAGCGATCT GCCGGCGCCG GGCGTCTGGC CGGCGCTGTT CGGGCTCGGC
GTCGGCATGG TGCTGCTCGC CGCCTTCGGC CTGCCGCCGG TGCTGCAGCT CGCCAGCGTG
CCGCCGCTGC GGGTGATCCG GCGCGAGCTG GGCGAGCGCA AGGCCGCCAG CCTGGGCGTG
CTGCTGGCCG GGCTGATCGG TTTTGCGGCG CTGCTGCTGG CGGTGGCGGC CGACTGGAAG
CTCGGCGGCA TCGCCGTCGG CGGTTTTGCC GGCGCCTGGC TGCTGTTCGC GCTCGGCGCC
TGGGGCGGCG TGCTACTGCT GCGCCGCGCC GTGCCGGACG TCGGCGCGCC GCGCTGGCTG
GCGCTGGCCA CGCGCCAGCT CGGCGCCCGG CCGGGCCTGG TGGTGCTGCA GGTCAGCGCG
CTCGCGCTCG GCCTGATGGC GCTGGTGCTG CTGGTGCTGC TGCGCACCGA CCTGATCGCC
AGCTGGCGCG CCGCCACGCC GGTGGATGCG CCCAACCGCT TCGTCATCAA CGTGCAGCCC
GAGCAGTCCG ACGCCTTCCA GGCCAGCCTG CGCCAGTCCG GCGTCGCCAA CTACGACTGG
TACCCGATGA TCCGAGGCCG CCTGCTGGCG GTGAACGACC GCGCGGTGCA GGTCGACGAT
TACAAGGACG ATCGCGCCCG CCGGCTGGTC GACCGCGAGT TCAACCTGAG CCACGCCGCC
ACGCTGCCCG GCCACAACCG CGTCGTCGGC GGTGCCTGGC AGGCCGAAGA CAGCGATGCG
ATGAGCGTCG AACAGGGCCT GGCCGAAACC CTCGGCCTGA AACTCGGCGA CCGCGTGACC
TTCGACATCG CCGGCGTGCC CGTCACGACC CGCATCACCA GCTTGCGCAA GGTCGACTGG
ACGTCGATGC GGGTGAACTT CTTCGTGATG TTCCCGCGCG CCGTGATGGC CGACCTGCCG
GCCACCTACA TCGCCGCCTT CCGGGCGCCG CCGCAGGCCG GCTTCGACGG CGCGCTGACA
CGCGACTTCC CCAACATCAC CAGCATCGAC GTCTCGGCCC AGATCGCGCA GATCCAGCGG
GTGCTCGATC AGGTGATCTC GGCGGTGGAG TTCCTGTTCG GCTTCACGCT GGCGTCGGGA
CTGCTGGTGC TGTTCGCCGC CGTCAGCGCC ACCCGCGAGG CGCGCGCGCG CGAATTTGCG
CTGATGCGCG CGATGGGCGC GAGCCGGCGC CTGCTGGCGG CCGTGCAGCG CACCGAACTG
CTGGGCGTGG GCGCCCTGGC CGGCGCACTG GCCAGCGCGG CGGCGCTGGT GGTGGGCTGG
GCGCTGGCGC GTTACGTGTT CAATTTCGAC TGGACCGCGC CGCTGTGGGT GGCGGCCGTG
GGCACGCTGG TCGGCGCCGT GCTGGCCTGG CTGGCCGGCT GGTACAGCCT GCGTGAAGTG
CTGCGCCAGC CCGTCAATCA GACCCTGCGC CGCGCCCAGG AATGA
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| Protein sequence | MPPQPPSSSI AADTAPGGAL GSAPRAVRPN RPTPVWILAW RQLRRDLRAG ELRLMLVAVA
LAVAALSAVG FFADRLQGGM NRDALALLGG DAVVASDQPL PADFAATAAE MGLAAARSAT
FPSMARADEA RGGAARLVSV KVVEPAYPLR GSLQIADTPQ GAPRAVGNGP AAGTVWVDAA
VLDALALGVG DALQLGDARL RIAQVIVQEP DRGAGFINFA PRVMLADTDL AATGLIQPAS
RVTWRLAVAA REGRGSDSAV QGFVSWAEAR IEGRKIRGAR VESLEGARPE MRQTLDRAGQ
FLRLVAVLAA LLAAVAVGIA ARGFAARHID ACAMLRVLGL PQRRIAAIYG IEIGLVGLAA
SVIGVLIGLV VHLVFVWLLA GLVNSDLPAP GVWPALFGLG VGMVLLAAFG LPPVLQLASV
PPLRVIRREL GERKAASLGV LLAGLIGFAA LLLAVAADWK LGGIAVGGFA GAWLLFALGA
WGGVLLLRRA VPDVGAPRWL ALATRQLGAR PGLVVLQVSA LALGLMALVL LVLLRTDLIA
SWRAATPVDA PNRFVINVQP EQSDAFQASL RQSGVANYDW YPMIRGRLLA VNDRAVQVDD
YKDDRARRLV DREFNLSHAA TLPGHNRVVG GAWQAEDSDA MSVEQGLAET LGLKLGDRVT
FDIAGVPVTT RITSLRKVDW TSMRVNFFVM FPRAVMADLP ATYIAAFRAP PQAGFDGALT
RDFPNITSID VSAQIAQIQR VLDQVISAVE FLFGFTLASG LLVLFAAVSA TREARAREFA
LMRAMGASRR LLAAVQRTEL LGVGALAGAL ASAAALVVGW ALARYVFNFD WTAPLWVAAV
GTLVGAVLAW LAGWYSLREV LRQPVNQTLR RAQE
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