| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1596 |
|---|
| Symbol | |
|---|
| ID | 6162615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1692834 |
|---|
| End bp | 1693991 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641664350 |
|---|
| Product | response regulator receiver sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001790628 |
|---|
| Protein GI | 171058279 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4564] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.00430448 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGAC AGACCAAGCT GCGCCGCGTG CGTATCCTCC ACCTCGAGGA TTCCGAGCTC
GACCACCAGT TGCTGCTCGC CCACCTGCGC CGCGGCGGCA TCGAGCCGTC GATGCGCCGG
GTCGACACCG AAGCCGAATA CATGGCCGCA CTCGGCCACG CCTGGGACGC GGTGATCTCG
GACTACAACC TGCCGGGCTT CTCGGGCCTG GTGGCGCTGG AGCTGCTGCG CGAACGCGAC
AAGCTGATGC CCTTCATCCT GGTGTCGGGC GAGATCGGCG AGGACACCGC CGTCGAGGCG
ATGCGCAACG GCGCCTCCGA CTACCTGCTC AAGAGCAACC TGGCACGGCT GGTGCCGGCG
CTGATGCATT CGGTCGACGC CTGCGAGACC CAGCGGGCCC GCCAGCGCGC CGACCACGAG
CTGGCGCAAT CGCGTCGTCG CCTGTCCGAG CTGGCCCAGC ACCTGCAAAC GAGCATCGAA
CTCGAGCGCA CCGCGATCTC GCGCGAGATC CATGACGACG TCGGGGGCTC GCTGACGGCG
GTCAAGTTCG ATCTGGCCTG GATCGTGCGG CATGCCGGCA ACGCCCAGAT GATCGAACGT
GCACAACAGG CGCTGGAAAC TGTCAATCAC GCCATCGAGG CCAGCCAGCG CATCATGCAC
AACCTGCGCC CGGCTATCCT CGAACAAGGA CTGGTGGCCG CGCTGCAATG GATGACGCAG
CGTTTCGAGC GCCGCAGCGG CATATCGACC ACCTTCCGCA CCAGCCACGA CCACCTGCGC
CTGCCGGCCG GCGTGCCGCT GGTGGCGTAC CGAACCGCAC AGGAAGCCTT GACCAACATC
TCCAAGCACG CCCGAGCGAC CCGCGTCCAG GTCGACCTGA CGATGGCCGC CGGCGTGCTC
TCGCTCGAGA TCAGCGACAA CGGCCGCGGC CTCGGCGTGG GAGACCTCGG CAAGGACCGC
TCGTTCGGCA TCCGCGGCCT GCACGAACGG GCCGACACCG TGGGCGGCTG GGTCGACCTG
TCCGGCACCC CGCAAGGCAC CACGCTGATC CTGTCGGTGC CGCTCGAACA GTCCGCCATG
CGGCACCACG ACGCCGATGA CGGCGGGCCG CCGCCGCCCA CCAGCCCGCA CGATCCATCC
ACCTGGGGAG ACCTATGA
|
|---|
| Protein sequence | MQRQTKLRRV RILHLEDSEL DHQLLLAHLR RGGIEPSMRR VDTEAEYMAA LGHAWDAVIS
DYNLPGFSGL VALELLRERD KLMPFILVSG EIGEDTAVEA MRNGASDYLL KSNLARLVPA
LMHSVDACET QRARQRADHE LAQSRRRLSE LAQHLQTSIE LERTAISREI HDDVGGSLTA
VKFDLAWIVR HAGNAQMIER AQQALETVNH AIEASQRIMH NLRPAILEQG LVAALQWMTQ
RFERRSGIST TFRTSHDHLR LPAGVPLVAY RTAQEALTNI SKHARATRVQ VDLTMAAGVL
SLEISDNGRG LGVGDLGKDR SFGIRGLHER ADTVGGWVDL SGTPQGTTLI LSVPLEQSAM
RHHDADDGGP PPPTSPHDPS TWGDL
|
|---|
| |