Gene Lcho_1589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1589 
Symbol 
ID6162996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1687705 
End bp1688316 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content66% 
IMG OID641664343 
Productimidazoleglycerol-phosphate dehydratase 
Protein accessionYP_001790621 
Protein GI171058272 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0131] Imidazoleglycerol-phosphate dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00273051 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACGAAG CAACGATGGC CGCCCCGCGC GTGGCCGAAG TCCAGCGCAA CACCAACGAG 
ACGCGCATCA GCGTGCGCAT CAACCTCGAC GGCAGCGGCG TTTCCAAGCT CGCCACCGGC 
ATCGGTTTCT TCGACCACAT GCTCGACCAG ATCGCCCGCC ACGGCATGAT GGACATCGAG 
GTGGCCGCTG ACGGCGACCT GCACATCGAC GGTCATCACA CGGTCGAGGA CGTCGGCATC 
ACGCTCGGCC TTGCGGTGGC CAAGGCAGTC GGCGACAAGA AGGGCATCAC CCGTTACGGC 
CACAGCTACG TGCCGCTGGA CGAAGCGCTG TCGCGCGTGG TGGTCGATTT TTCGGGCCGC 
CCCGGCCTGG AGATGGACGT GCATTTCAGC GCCGGCATGA TCGGCGGGCT CGACACCCAG 
CTGATCTACG AGTTCTTCCA GGGTTTCGTG AACCACGCGC TGGTGAGCCT GCACATCGAC 
AACCTCAAGG GCCGCAACGC CCACCACCAG GCCGAGACGA TCTTCAAGGC CTTCGGCCGC 
GCGTTGCGCA TGGCGCTGAC GCCCGATCCG CGCTCGGCCG GGGTGATCCC GTCGACCAAA 
GGGAGCCTCT GA
 
Protein sequence
MNEATMAAPR VAEVQRNTNE TRISVRINLD GSGVSKLATG IGFFDHMLDQ IARHGMMDIE 
VAADGDLHID GHHTVEDVGI TLGLAVAKAV GDKKGITRYG HSYVPLDEAL SRVVVDFSGR 
PGLEMDVHFS AGMIGGLDTQ LIYEFFQGFV NHALVSLHID NLKGRNAHHQ AETIFKAFGR 
ALRMALTPDP RSAGVIPSTK GSL