| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1520 |
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| Symbol | |
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| ID | 6161565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1605959 |
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| End bp | 1607590 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664275 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001790553 |
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| Protein GI | 171058204 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.112151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCATCA ATACGCCGAA CACCCAGAGG GAATACGTGT TCCCGGCCGG AAAGACGCTG
GTCTCGACCA CCGATCTGAA AGGCCGCATC ACCTACTGCA ACCCGGCCTT CATCGAAGTC
AGCGGTTACT CTCGAGAAGA GCTGCTCGGC CAGCCGCACA ACCTGATCCG CCACCCGGAC
GTGCCCGAAG AAGCCTTCCG CGACCTCTGG CGCACCATCG AGGCCGGCCA GCCGTGGTCG
GGCCTGGTCA AGAACCGCCG CAAGACCGGC GACCACTACT GGGTGCTGGC CAACGTCACG
CCGCTGATGG AGGGCGACCG GCCGAGCGGC TACCTGAGCG TGCGCACCGA AGCCACGCGC
GAACAGATCG ACGCGGCCGA GGCGCTCTAC GCGCAGATGC GTGACGAGCA CGCGCGCGGG
CGGCTGGTGC ACGTGCTCAG CGGCGGGGCC GTGATCCGGC GCACGCTCGG TGGCCGGCTG
CGCCGCTGGG TGTCGTTCGA CATCACCAAG GCCGTGACCG GGCTCAGCCT GCTGACGGCG
TACGCCGGCT GGTCGATCGC CCAGTTCGGC AGCAGCGGCT GGCTGCTGGG CGCCGAGTGC
GCGGCGGTGG CCGCGCTGGC GGTCGGCTCG GCGTGGCTGA CCCGCCGCCT GCTGCTCGGG
CCGTTCGAGG GCCTGAACCT GTTCGCCAAC CGCCTGGCCG CCGGCGACCT GACCGGCCGC
ATCGCGGTGC ACCACGGCGG CGTGGTCGGC CAGTGCGAGC GTGCGCTCAA CCAGCTGGCG
GTCAACCTGC TGGCAACCGT GCGCGATGCC CGCGCCGGGG TCGACAACCT GCGCGGCACC
GCCTCCGAAC TGGCGGCCGG CAACACCGAC CTGTCGAGCC GCACCGAATC GCAGGCGTCC
AGCCTGGAAC AGACCGCCGC CTCGATGGAA GAGATCACCG GCACCGTCAA GCAGAGCGCC
GACTCGGCGC GTGGTGCGGC CAGCTTCGCC GAGCAGGTCA ACCAGGTGAC CGTGCGCAGC
GCCGACGCGG TGCACAGCGT CAGCGAGACG ATGGACGACA TCAGCCGCTC GTCGGCGCGC
ATCAACGAGA TCATCCAGGT GATCGACGGC ATCGCCTTCC AGACCAACAT CCTGGCCCTC
AACGCGGCCG TGGAAGCCGC GCGAGCCGGC GAGCAGGGGC GTGGGTTCGC GGTGGTGGCC
GCCGAAGTGC GCTCGCTGGC GCAGCGCACC TCGACCGCGG CACGCGAGGT CAAGCAGCTG
ATCGAGGACT CGGCCAGCAA GGTCGCCACC GGCGCACGGC AGACCGACGA CGCCCGCTCG
GCGATGGACG AGGTGCTCGA ATCGGTGCGA CGCATGAACG CCCTGGTCGG CGAGATCGAC
AACGGCGCCA CCGAACAGCT CACCGGCATC TCGCAGGTCA ACGAGGCGGT CGCCCACATG
GACAGCCTGA CGCAGCAGAA CGCCGCGCTG GTCGAGCAAC TGGCCGCCTC GGCGATGGCT
GTGCGCAGCC AGAGCGAGGG CGTGGCCGAG GCGGTCAGCG TGTTCCGGCT GCACCGCAGC
GATCGGCACG ACATCCCCGA TGCGGTCGAA CTGCGGCGCC GGATGAAACG CGAGCGCGCC
GCCGCCCACT GA
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| Protein sequence | MRINTPNTQR EYVFPAGKTL VSTTDLKGRI TYCNPAFIEV SGYSREELLG QPHNLIRHPD
VPEEAFRDLW RTIEAGQPWS GLVKNRRKTG DHYWVLANVT PLMEGDRPSG YLSVRTEATR
EQIDAAEALY AQMRDEHARG RLVHVLSGGA VIRRTLGGRL RRWVSFDITK AVTGLSLLTA
YAGWSIAQFG SSGWLLGAEC AAVAALAVGS AWLTRRLLLG PFEGLNLFAN RLAAGDLTGR
IAVHHGGVVG QCERALNQLA VNLLATVRDA RAGVDNLRGT ASELAAGNTD LSSRTESQAS
SLEQTAASME EITGTVKQSA DSARGAASFA EQVNQVTVRS ADAVHSVSET MDDISRSSAR
INEIIQVIDG IAFQTNILAL NAAVEAARAG EQGRGFAVVA AEVRSLAQRT STAAREVKQL
IEDSASKVAT GARQTDDARS AMDEVLESVR RMNALVGEID NGATEQLTGI SQVNEAVAHM
DSLTQQNAAL VEQLAASAMA VRSQSEGVAE AVSVFRLHRS DRHDIPDAVE LRRRMKRERA
AAH
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