Gene Lcho_1515 details

Gene Information

• Locus tag: Lcho_1515
• ID: 6163341
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1601462
• End bp: 1602088
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641664270
• Product: NUDIX hydrolase
• Protein accession: YP_001790548
• Protein GI: 171058199
• COG category: [L] Replication, recombination and repair; [R] General function prediction only
• COG ID: [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.0865072
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGTCAC TGCCCAGCTA CGCCGACCTG CCCGAGGGCG ACGCTCACCT GCGTGAGCAT 
TGCATCCAGG GCACGCAGGT CTACCGCGGT CACTTTCTCG ACGTGCGCCG CGACGAGATC 
GCCCTGCCCG ACGGCGGGCG TGCCGCGCGC GAGTACATGG TGCATCCGGG GGCGGTGATG 
ATCATCCCGC TGCTCGACGA CGGCCGGCTG CTGCTGGAGC GCCAGTTTCG TTACCCGCTG 
TCGCGCGCGG TGATCGAGTT CCCGGCCGGC AAGCTCGACG CCGGTGAGTT GGGCATCGTC 
TGCGGCGTGC GTGAACTGCA GGAAGAAACC GGCTACACCG CCGCCGAATG GGCCTACGCG 
GGCGAGCTGA ACAACGCCAT CGCCTATTCG TCCGAACGCA TCGAGATCTG GTTCGCGCGC 
GGTCTGCAAG CCGGCCCGGC CTCGCTCGAC GAGGGCGAGT TCCTCGACGT GTTCGCCGCC 
AGCGCGCAAG AACTCGCCGA CTGGATCCGC GACGGCCTGG TCTGCGACGC CAAGACCATG 
ATCGGTCTGC TGTGGCTGCA GCAATGGCGC AGTGGCCAGT GGGGCCTGAA CTGGGCGTCA 
GCCGAGCAGC AGATCGCCGC TCGATAA 

 

Protein sequence

MKSLPSYADL PEGDAHLREH CIQGTQVYRG HFLDVRRDEI ALPDGGRAAR EYMVHPGAVM 
IIPLLDDGRL LLERQFRYPL SRAVIEFPAG KLDAGELGIV CGVRELQEET GYTAAEWAYA 
GELNNAIAYS SERIEIWFAR GLQAGPASLD EGEFLDVFAA SAQELADWIR DGLVCDAKTM 
IGLLWLQQWR SGQWGLNWAS AEQQIAAR