| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1504 |
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| Symbol | |
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| ID | 6162439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1588316 |
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| End bp | 1589569 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641664259 |
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| Product | NADH dehydrogenase subunit D |
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| Protein accession | YP_001790537 |
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| Protein GI | 171058188 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
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| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00434712 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAAA TCAAGAACTA CACGCTGAAC TTCGGTCCCC AGCACCCGGC CGCGCACGGT
GTGCTGCGCC TGGTGCTCGA ACTGGACGGC GAAGTCATCC AGCGTGCCGA CCCACACATC
GGCCTGCTGC ACCGCGGCAC CGAGAAGCTG GCCGAGAGCA AGACCTTCAT CCAGTCCTTG
CCCTACATGG ACCGTCTCGA CTACGTGTCG ATGATGTGCA ACGAGCACGC CTACTGCCTG
GCGATCGAAA AGCTCATGGG CATCCAGGTG CCCGAGCGGG CGCAGTACAT CCGCGTCATG
TTCAGCGAGA TCACGCGTCT GCTGAACCAT CTGCTGTGGC TGGGCTGTCA CGGCATGGAC
TGCGGTGCGA TGAACATGCT CATCTACTGC TTCCGGGAGC GTGAAGACCT GTTCGACATG
TACGAGGCGG TGTCGGGTGC ACGCATGCAC GCGGCCTATT TCCGTCCGGG CGGTGTCTAT
CGCGACCTGC CGGACGTGAT GCCGCAGTAC AAGGTCAGCA AGATCCGCAA CGCCAAGGCG
ATGGCGCGTC TCAACGAGAA CCGCCAGGGC TCGCTGCTCG ATTTCATCGA CGATTTCACC
AAGCGCTTCC CGACGCTGGT CGACGAATAC GAAACGCTGC TGACCGATAA CCGCATCTGG
AAGCAGCGCA CCGTGGGCAT CGGCGTGCTG ACGCCCGAGC GGGCGCTCAA CCTTGGCCTG
ACCGGCGCGA TGATCCGCGG CTCCGGCATC GCCTGGGACC TGCGCAAGAC GCAGCCCTAC
GACGTCTACG ACCGCATGGA CTTCGACATC CCGGTTGGCG TCAACGGCGA CACCTACGAC
CGCTACCTGG TGCGTGTCGA GGAGATGCGC CAGTCGAACC GCATCATCGA GCAGTGCTCG
GCTTGGCTGC GTGCCAATCC GGGCCCGGTG ATCACCGACA ACCACAAGGT CGCTCCGCCG
TCGCGCGTCG AGATGAAGAC CTCGATGGAA GAGCTGATCC ACCACTTCAA GCTGTTCACC
GAAGGTTTCC ACGTGCCCGA AGGCGAGGCC TATGCGGCCG TCGAGCACCC GAAGGGCGAG
TTCGGCATCT ACGCCATCAG CGATGGCGCG AACAAGCCGT ACCGCCTGAA GATCCGCGCT
CCCGGCTTCG CGCATCTGGC CGCACTCGAC GAGATGTCGC GTGGCCACAT GATTGCCGAC
GCCGTGGCCA TCATCGGCAC GATGGACATC GTGTTCGGCG AAATCGATCG ATGA
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| Protein sequence | MAEIKNYTLN FGPQHPAAHG VLRLVLELDG EVIQRADPHI GLLHRGTEKL AESKTFIQSL
PYMDRLDYVS MMCNEHAYCL AIEKLMGIQV PERAQYIRVM FSEITRLLNH LLWLGCHGMD
CGAMNMLIYC FREREDLFDM YEAVSGARMH AAYFRPGGVY RDLPDVMPQY KVSKIRNAKA
MARLNENRQG SLLDFIDDFT KRFPTLVDEY ETLLTDNRIW KQRTVGIGVL TPERALNLGL
TGAMIRGSGI AWDLRKTQPY DVYDRMDFDI PVGVNGDTYD RYLVRVEEMR QSNRIIEQCS
AWLRANPGPV ITDNHKVAPP SRVEMKTSME ELIHHFKLFT EGFHVPEGEA YAAVEHPKGE
FGIYAISDGA NKPYRLKIRA PGFAHLAALD EMSRGHMIAD AVAIIGTMDI VFGEIDR
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