Gene Lcho_1402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1402 
Symbol 
ID6160023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1489656 
End bp1490291 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content67% 
IMG OID641664156 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001790435 
Protein GI171058086 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATGC GGGTCTTCAT CGCCGACGAT CATCCGGTGG TCCGGCAAGG CCTCAAGCAG 
CTGCTGGGCG CCGAGGCCGA TTTCAGCGTC GCCGGCGAAG CCAGCAGCGG CCACGAGGTG
ATCGACCAAT GCGGGCGCTT CGCCTGGGAC GTGGCGGTGC TCGATTACCG GATGCCCGGC
AAGGGCGGCA TCGACCTGAT CAAGGAACTG CGCCAGCGCT TCCCGGACCG GCCGGTGCTG
GTGCTGAGCG TCTGCCCGGA GGACCAGTAC GCGATGCGTG TGCTGCGCGC CGGTGCGGCC
GGCTACCTGA CCAAGGAAAG TGCGCCCGAG GACCTGGTCA ACGCCATCCG CAAGGTGGCG
CGTGGTGGGC GTTTCGTCAG CGCCGCACTG GGCGAGCAGC TGGCGCTGTC GCTGTCGACC
GGTGGCGACG AGCCGCTGCA TTGCCGCCTG TCGGACCGCG AGTACCAGAT CATGTGGCTG
CTCGCCTCGG GCAAGAAGGT CGGCGAGATC GCGCAGCAGC TCTTCCTCAG CCCGAACACC
ATCAGCACCT ACCGCAAGCG CATCCTCGAG AAGCTCGATC TGAAGAGCAA TGCCGAGCTG
ATGCGCTACG CCATCGGGCA TCAGCTGGTC GATTGA
 
Protein sequence
MNMRVFIADD HPVVRQGLKQ LLGAEADFSV AGEASSGHEV IDQCGRFAWD VAVLDYRMPG 
KGGIDLIKEL RQRFPDRPVL VLSVCPEDQY AMRVLRAGAA GYLTKESAPE DLVNAIRKVA
RGGRFVSAAL GEQLALSLST GGDEPLHCRL SDREYQIMWL LASGKKVGEI AQQLFLSPNT
ISTYRKRILE KLDLKSNAEL MRYAIGHQLV D