| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1372 |
|---|
| Symbol | |
|---|
| ID | 6159990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1454682 |
|---|
| End bp | 1456463 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641664126 |
|---|
| Product | transcriptional regulator NifA |
|---|
| Protein accession | YP_001790405 |
|---|
| Protein GI | 171058056 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACC GGACGGTGAT GAATGAACGG TCTCACGTCG AGCTGATCAC GATCTACGAG
ATCTGCCGCA TCCTCGGTGC CTCGCTCGAC ATCGGGCGCA CGTTTCGCGC CTCGTTGAAC
GTGCTGGCTG CGCACCTCGG CCTGTCGCGC GTGATGATCG TGATGGCGCC CGATGACCGG
GATGGCGAGG CACGGCTGCG TGTGCACAGC TCCGTCGGGC TGGATCAGGA GCAGGAGCGC
CGCGGCCAGT GGCATTACGG CGAAGGCGTG ATCGGCCACG TCTATGCCAG CGGCATGCCG
GTGGTGGTGC CCGACGTGGC GCAGGCCGCG GAGTTCATCG ATCGCACCGG GGCTTTCGGC
GCACAGGCCG ATCGCATGAT GGCGTTCGTG GTGGTGCCGC TCAAGACCGA CCGGGCCGTG
GTCGGCGTGC TGGCGGCCCA GCGCGAGGTC AGCGGCGGTG TGCGTCTGTC GGACGATCAG
CGCATCCTCA CGATGGCCGC CACGCTGATG GCGCAGGCCG CGTCGTTGCA CGGCGCGGTC
ACCGAGGAAC ACAAGCGCCT GCAGCTCGAG ACCACCCGCC TGCAGAAGGC GCTGGCGCCC
GAGCCGCGCG GGCGCTACAC GCTCGACAAC GTGGTCGGCG TGTCGCGTGG CATGCAGCAG
GTCTTCAGCG AGGTGCACCA GGCCGCGCCC GCGCGTGCCA CCGTGCTGCT GCGCGGCGAG
AGCGGCACCG GCAAGGAGGC GATCGCGCGG GCGCTGCATT ACCTGTCGCC ACGCAAGGAC
GCACCGTTCA TCAAGGTCAA TTGCGCGGCA TTGACCGAAT CACTGCTCGA GAGCGAACTG
TTCGGCCACG AGCGGGGCGC CTTCACCGGT GCGGCCGGTG ACCGCAAGGG CCGCTTCGAG
CAGGCGCACA CCGGCACGCT GTTCCTCGAC GAAGTGGGCG ACATCTCGGC ATCGTTCCAG
GCCAAGCTGC TGCGGGTGCT GCAGGAGCGC GAGTTCGAGC GCGTGGGCGG CAACCGCGCG
ATCAAGGTCG ACGTGCGGCT GATCTGCGCC ACCAACCGCG ACCTCGAGAA GATGGTCAAG
CGTGGCGAGT ACCGCGCCGA CCTCTATTAC CGCATCAACG TGGTGTCGAT CTTCCTGCCG
CCGCTGCGTG AGCGGCGCGA CGACATCCCG GCCCTGGTGT CGCACTTCGT CGACCGCTTC
AACAAGGAGA ACCGCCGCAA GCTCAGGATC GCCGGTGACG CGATGGAGGT GCTGTCGCAC
TGCTACTGGC CGGGCAATGT GCGCGAACTC GAGAACTGCA TCGAGCGCAC CGCCACCATG
GCCAATGGCG ACCTGATCCG CGGCGTGTCG TTCCCGTGCC GCCACAACCG CTGCCTGACG
CAGACGCTGC ATCACCTCGA GAAGGACGAC GCGGTCGCGC CGATCAGCAT GCCGACGTCG
CTGCACATCC CCGCACGGCT GCCGATCCGG GAGTCGCCGC GGCCGGTGCC CGGGTCGATC
CCGGCTTCGG CGGCTGCCGC ATCGGCGGAC CCCGATGACG ACTGGCTCGA CGACGAGGCC
GATGGCGGCG ACGACGTGTT GCGCATCGGC CCGACCGAAC ACCTCACCGG TACACCGCGC
CAGTTCGGCA ACGAGCCACC GGATGGCGAG CGCGAGCGCC TGATCTGGGC CATGGAGCAA
TGTGCCTGGG TGCAGGCCAA GGCGGCGCGG CTGCTGCACG TGACGCCGCG CCAGCTCGGA
TATGCGCTGC GCAAGTACAA CATCGAGGTG CACAAATTCT GA
|
|---|
| Protein sequence | MLNRTVMNER SHVELITIYE ICRILGASLD IGRTFRASLN VLAAHLGLSR VMIVMAPDDR
DGEARLRVHS SVGLDQEQER RGQWHYGEGV IGHVYASGMP VVVPDVAQAA EFIDRTGAFG
AQADRMMAFV VVPLKTDRAV VGVLAAQREV SGGVRLSDDQ RILTMAATLM AQAASLHGAV
TEEHKRLQLE TTRLQKALAP EPRGRYTLDN VVGVSRGMQQ VFSEVHQAAP ARATVLLRGE
SGTGKEAIAR ALHYLSPRKD APFIKVNCAA LTESLLESEL FGHERGAFTG AAGDRKGRFE
QAHTGTLFLD EVGDISASFQ AKLLRVLQER EFERVGGNRA IKVDVRLICA TNRDLEKMVK
RGEYRADLYY RINVVSIFLP PLRERRDDIP ALVSHFVDRF NKENRRKLRI AGDAMEVLSH
CYWPGNVREL ENCIERTATM ANGDLIRGVS FPCRHNRCLT QTLHHLEKDD AVAPISMPTS
LHIPARLPIR ESPRPVPGSI PASAAAASAD PDDDWLDDEA DGGDDVLRIG PTEHLTGTPR
QFGNEPPDGE RERLIWAMEQ CAWVQAKAAR LLHVTPRQLG YALRKYNIEV HKF
|
|---|
| |