Gene Lcho_1297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1297 
Symbol 
ID6160909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1383778 
End bp1384422 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content73% 
IMG OID641664051 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_001790331 
Protein GI171057982 
COG category[R] General function prediction only 
COG ID[COG2249] Putative NADPH-quinone reductase (modulator of drug activity B) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0160293 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCTC CTCGGGGCGC CAGCGGGCCG CACGTGCTGG TGCTGGTCGC CCACCCCGAC 
CTGCGCCGCT CCCGGGTCAA CCGGCGGCTC AAGCAGCGCG GCCAGGCTGC GGCCCGGTCG 
GCGCCGGGCA TCGAGGTGCG CGACCTCTAC GCGCTGTACC CCGACTTCAC GATCGACGTG 
GGCGCCGAGC AGGCCGCGGC GGCGGCGGCC GACCTGATCG TCTGGGTGCA CCCGATCCAG 
TGGTACGCGA TGCCGGCGCT GATGAAGCTG TGGGTCGACG AGGTCCTGAG CCTGGGCTGG 
GCCTACGGCC CGGGCGGGCG GGCGCTGGCC GGCAAGGACC TGTGGCTGGT GACGTCCACC 
GGCGCTCGCC AGGAGGCCTA TCACCCGTCG GGCTACAACC GCCATTTCTT CGACGCCTTC 
CTGCCGCCCT ACGAACAGAC CGCGGCGCTG TGCGGGCTGC GGTTCCTGCC GCCGCTGGTG 
CTGCACGGCG CCCACGTCGC GTCGGCGGAC GAGCTCGACA GCCACGCCGC ACTCTTCGGC 
CAGCGCATCC TGAGCCACCC CGACTGGCCC GAACTCGCCG ACCTGCCGGC CTGCGAGGCC 
TGCATCACCC CGGCACAAGA CCGTCCGAAC CGGGCCCTCG CATGA
 
Protein sequence
MAPPRGASGP HVLVLVAHPD LRRSRVNRRL KQRGQAAARS APGIEVRDLY ALYPDFTIDV 
GAEQAAAAAA DLIVWVHPIQ WYAMPALMKL WVDEVLSLGW AYGPGGRALA GKDLWLVTST 
GARQEAYHPS GYNRHFFDAF LPPYEQTAAL CGLRFLPPLV LHGAHVASAD ELDSHAALFG 
QRILSHPDWP ELADLPACEA CITPAQDRPN RALA