| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1294 |
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| Symbol | |
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| ID | 6160906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1378496 |
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| End bp | 1380223 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664048 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001790328 |
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| Protein GI | 171057979 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00873235 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCACCA ACTTGCCTGT CACCCAGCGC GAATACGCGT TTCCCGCCGG TCAGACGCTG
GTCTCGGTCA CCGACCTCAA AGGGCGCATC ACCTACGCCA ACGCCGCCTT CATCGCGGTC
AGCGGCTTCC GCCGCGAGGA ACTGCTCGGC CAGCCGCACA ACCTGGTGCG CCATCCGGAC
ATGCCGGAAG AAGCCTTCCG CGACATGTGG CAGACCATCG GCTCGGGCGT GCCGTGGACC
GGCCTGGTCA AGAACCGGCG CAAGGACGGC GATCACTACT GGGTGCAGGC CAACGCCACG
CCGATGATGG ACGGCGAGCG CATCACCGGT TTCCTGTCGG TGCGCACCCA GCCCTCGCGC
CAGGAGATCG ATGCCGCCGA GCGCCTGTAT GCGCAGATGC GGGCCGAAGT CCAGGCCGGC
CGCCTGGTGC ATCGGCTGCA GCGTGGCACC GTGCGGCGCG CCGACCTGCG CGGCCGGCTG
GGCCGCCTGC TCAGGCCCGG CCAGCGCGCC CAGGTGCTGG CGATCCAGAC GGCTTGCGTT
CTGGCCGCGG TCGCCGTCGG CGAGACCTTG CCGGTCTGGC AGGCGATGCT GCTGGCGACG
GGCGTGGTCG GTGTGGCGAC GTGGGCCATG CTGCAGCGCC TGTTCGGGCC CCTCGATGCG
GTGCTGACCG ATGCCCACCA CCTGGCATCC GGTGACCTGG CGCACCGCGT CGGCACCGGC
GCGCCGGGCA TCGCCGGCGA GCTGCAGCAG GCGCTGATGC AGATGTCGGT CAACCTGCGC
ACCGTCGTGC ACGACACCCG CACCGAGATC GAGAACCTGC ACGTGACGGC CAGCGAGATC
AGTGCCGGCA ACCACGACCT GTCGGCGCGC ACCGAATCCC AGGCCAGCAG CCTGGAGCAG
ACCGCGGCGT CGATGGAGCA GATCAACGGC ACCGTGCAGC AGACCGCCAG CTCGGCCGTG
CAGGGCGCGC GCAGCGCCCG GGAGACCGCC GACGTGGCGC GGCGCAGCCA GCAGGCGGTG
ACCGACGTGG CCGAGACGAT GGGCCGCATC AGCGAGTCGT CGCGTCGCAT CGCCGAGATC
CTGCACGTGA TCGAGGGCGT GGCGTTCCAG ACCAACATCC TGGCGCTCAA TGCCGCGGTC
GAGGCCGCGC GCGCCGGTGA ACACGGCCGC GGTTTCGCGG TGGTGGCCGC CGAGGTGCGC
GAGCTGGCGC AGCGCACCGC CTCGTCGGCG CGCGAGATCA AGCAGCTGAT CGGCGAGTCG
GCCCAACGGG TCACGCTCGG CAGCACGCAG AGCGCCGCCG CGCAGCAGCG CATGGGCGAG
GCCCTGCACG CGGTCGACGC GGTGCAGGCG ACGCTCGAGA CCATCAGCAC CGCCACCTCC
GAACAGCAGT CGGGCATCTC GCAGATCAAC GAGGCGGTGG CGCACATGGA CTCGATCACG
CAGCAGAACG CCGCGATGGT CGAGCAGCTC GCGGCGGCGG CGCAGTCGCT GCAAGGCCAG
GTGGCCGCGG TGAGCGAATC GATGCGGCTG TTCCGGCTGT CGTCGGGCGA GGCCACCGTC
GCCGAGCGCG ATGCGGTCGA GCTGCGGCGC GACGGCCGGG CCACACCGGC CAAACCGGCG
GCAACGCCGG CCAACCGGCC GGCGCCTGCG CCGAAACGGG CTGCCGCTGC ACCCGAGCCG
CTCGCGGCGC AAGCTGCCGC AGGGGCCGAC GACTGGACCA GTTTCTGA
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| Protein sequence | MRTNLPVTQR EYAFPAGQTL VSVTDLKGRI TYANAAFIAV SGFRREELLG QPHNLVRHPD
MPEEAFRDMW QTIGSGVPWT GLVKNRRKDG DHYWVQANAT PMMDGERITG FLSVRTQPSR
QEIDAAERLY AQMRAEVQAG RLVHRLQRGT VRRADLRGRL GRLLRPGQRA QVLAIQTACV
LAAVAVGETL PVWQAMLLAT GVVGVATWAM LQRLFGPLDA VLTDAHHLAS GDLAHRVGTG
APGIAGELQQ ALMQMSVNLR TVVHDTRTEI ENLHVTASEI SAGNHDLSAR TESQASSLEQ
TAASMEQING TVQQTASSAV QGARSARETA DVARRSQQAV TDVAETMGRI SESSRRIAEI
LHVIEGVAFQ TNILALNAAV EAARAGEHGR GFAVVAAEVR ELAQRTASSA REIKQLIGES
AQRVTLGSTQ SAAAQQRMGE ALHAVDAVQA TLETISTATS EQQSGISQIN EAVAHMDSIT
QQNAAMVEQL AAAAQSLQGQ VAAVSESMRL FRLSSGEATV AERDAVELRR DGRATPAKPA
ATPANRPAPA PKRAAAAPEP LAAQAAAGAD DWTSF
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