| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1282 |
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| Symbol | |
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| ID | 6162173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1366098 |
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| End bp | 1368659 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641664036 |
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| Product | hypothetical protein |
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| Protein accession | YP_001790316 |
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| Protein GI | 171057967 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0000146358 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGGCA CCGGCGGCTG GGCCAGCGCG CAAAGCCTGT GGCTGATCGG CCTCGAATGG
CGCCAGCACC CCGGTCGGCT GCTGGTGGCG CTGCTGGCGA TCGCACTCGG CGTGGCGCTG
GCGCTGGCGG TGCACCTGAT CAACGCCTCG GCGCTGGCCG AGTTCGGCAG CGCGGTGCGC
TCGGTCAACG GCCAGCCGGA CTTCGAGCTG CGCCCGGCCA GCGGCGCGGG CCTGCCGGAG
GCGCTCTACG AAACCGTGGC CGCGCTGCCG CAGGTGGCGC TGGCCAGCCC GGTGATCGAG
ATCGACAGCA TCGCGATCGA CCCGCAAGGC GCCAAGCGAT CGCTGCGCGT GCTCGGCCTC
GACGCCCTGG TGGCCGCGAC ACTCGCGCCC GCGCTGCGGC CGCGCGCCGA CCCCGGCACC
GACCGGCTGG CGATGCTCGA TCCGGACCAG GTGTTCCTGA ACCCGGCGGC GCTGGCGCTG
GTCGACCCCA TCAACCGGGG TTCCGGCAGC CTGCGGCAAC TGCGCGTGCA AGGCGGCGCC
CGGCTGCTGA CGCTGACCGT GGCCGGCTCG GTCAGCGCCG ACGGCCCGCC GCTGGCGGTG
ATCGACATCG CCGGCGCGCA GTCGCATTTC GACCGGCTCG GCCGACTCAG CCGCATCGAC
CTGCGGCTGG CCGCCGGCGC CGATCGCGAC GGCCTGCAGC GCGCGCTCGA TGCCGCCGGC
GTGACGGGCG TGCGGTTGGC CGCGCCGGGC GAGTCGACGC TGCGCATCTC GAACCTGTCG
CGCGCCTACC GCGTCAACCT GACCGTGCTG GCGCTGGTGG CGCTGTTCAC CGGTGCCTTC
CTGGTGTTTT CGGTGCAGGC GCTGGCGGTC GCCAAGCGGG TGCCGCAGCT CGCGCTGCTG
GGCGTGCTGG GCATGGACGC GCGTGCCCGG CTGCGCCTGG TGCTGCTCGA ATCGGCGGCG
ATCGGCCTGA TCGGCGCGCT GATCGGCGTG GCGCTGGGCA CCGGCCTGGC GCTGCTGGCG
CTCGAGGTGC TGGGCGGCGA TCTGGGCAGC GGCCTGTTCG GCGGCAGCGC GCCGCCTCTG
CAGTGGTCAG CCTCGGCGGC GGCGATCTAC GCGGCGCTGG GCATGGCCGC GGCGCTGGCC
GGCGGCTGGT TGCCGGCGCG CCAGGCCCAG CGGCTGGCGC CGGCGCAGAG CCTCAAGGGC
CTGGGCGGTG ACGACGTCGG CGCGCCGCGC CCCTGGCTCG GCCCGCTGCT GCTGCTGGCC
GCACCGCTGC TGGCGCTGCT GCCGCCGGTC GGCGACCTGC CGCTGGCGGC CTATGCCTCG
GTGGCCTGCC TGCTGCTGGG TGGCATCGTC TGCGTGCCGG CGCTGGTGGG GGCGGTGCTG
GCGCGGCTGG CGCCGCCGCT GCAGCCGATC TGGCTGCTGG CGGTCGAGCG CGCCCGCGAC
CAGCGCCAGG TCGCCACCAT CGCGGTGGCC GGCGTGGTGG CGAGCCTGGC GCTCAGCGTG
GCGCTGACGG TGATGGTGGC GAGCTTTCGC GACTCGGTCA GCCAGTGGCT CGAACAGGTG
CTGCCGGCCG ACCTCTACGT GCGCACCGCC AGCAGCAGCG CGCAGGCCGA CAGCGTCTAC
CTCGAACCGG CGCTGCTGCA GGCCGCCGCG GCCCTGCCCG GCGTGGCCCG GCTGCAGACG
CAGCGCCTGG TGCCGCTCGA CCTCGATCCG CAGCGCGCGC CGGTCACGCT GATCGCCCGC
GAGATCGCCG ATCCGGCAAC CGGCCTGCCG CTGGTGGGCG CGCTGGTCGA CGCACCGGCC
AGCGACCGCG ACCTGCCGGT GGTCTACGCC AGCGAAGGCT ACATGGCGCT CTACGGCGCC
CGGCCCGGCC AGCGCATCAC GCTGCCGCTG CCCGACGGCC GGCGCGCCGA CGTCTGGCTG
CGCGGCGTCT GGCGCGACTA CGCGCGCCAG CAGGGCGCGA TCGCGATCGA GCGCTCGCAG
TGGCGCGCGC TCACCGGCGA CGAGCGCGTC AACGACCTCG GCCTGTGGCT GCAGCCCGGC
GCCGACCCGG CCGCGGTGCA GCAGGCGCTG CGCGGCCTGG CGGGCAACCC GGCGCTGCTG
GAGTTCGCCA CGCCGGCGGC CATCCGCGCC ACCTCGCTGG CAATCTTCGA CCGCAGTTTC
GCGGTCACCT ACTGGCTGCA GGCGGTGGCG ATCGGCATCG GCCTGGCCGG CATCGCGGCG
AGCTTTTCAG CCCAGGTGCT GGCGCGGCGG CGCGAGTTCG GCGCGCTGAT GCATCTGGGG
CTGCCGCGCT CGGGCGTGCT GGCGCTGGTG TGTGCCGAAG GCGCGCTCTG GAGCGCCGTC
GGCACCGTGC TCGGCCTGCT GCTGGGCGTG GGCGTGAGCG TGGTGCTGGT GCACGTCGTC
AACCCGCAGA GCTTTCACTG GACGATGGAC CTGTCGCTGC CGCTGCCGCG CCTGGCCGCG
CTGGCCGCCG CGGTGCTGGC CGCGGGCGTC GCCACCGCCT GGCTGTCGGG CCGCGCCGCC
GCCGGGCGCG AGATGGTGCT GGCGGTCAAG GAGGACTGGT GA
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| Protein sequence | MNGTGGWASA QSLWLIGLEW RQHPGRLLVA LLAIALGVAL ALAVHLINAS ALAEFGSAVR
SVNGQPDFEL RPASGAGLPE ALYETVAALP QVALASPVIE IDSIAIDPQG AKRSLRVLGL
DALVAATLAP ALRPRADPGT DRLAMLDPDQ VFLNPAALAL VDPINRGSGS LRQLRVQGGA
RLLTLTVAGS VSADGPPLAV IDIAGAQSHF DRLGRLSRID LRLAAGADRD GLQRALDAAG
VTGVRLAAPG ESTLRISNLS RAYRVNLTVL ALVALFTGAF LVFSVQALAV AKRVPQLALL
GVLGMDARAR LRLVLLESAA IGLIGALIGV ALGTGLALLA LEVLGGDLGS GLFGGSAPPL
QWSASAAAIY AALGMAAALA GGWLPARQAQ RLAPAQSLKG LGGDDVGAPR PWLGPLLLLA
APLLALLPPV GDLPLAAYAS VACLLLGGIV CVPALVGAVL ARLAPPLQPI WLLAVERARD
QRQVATIAVA GVVASLALSV ALTVMVASFR DSVSQWLEQV LPADLYVRTA SSSAQADSVY
LEPALLQAAA ALPGVARLQT QRLVPLDLDP QRAPVTLIAR EIADPATGLP LVGALVDAPA
SDRDLPVVYA SEGYMALYGA RPGQRITLPL PDGRRADVWL RGVWRDYARQ QGAIAIERSQ
WRALTGDERV NDLGLWLQPG ADPAAVQQAL RGLAGNPALL EFATPAAIRA TSLAIFDRSF
AVTYWLQAVA IGIGLAGIAA SFSAQVLARR REFGALMHLG LPRSGVLALV CAEGALWSAV
GTVLGLLLGV GVSVVLVHVV NPQSFHWTMD LSLPLPRLAA LAAAVLAAGV ATAWLSGRAA
AGREMVLAVK EDW
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