Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1269 |
Symbol | |
ID | 6162628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1354531 |
End bp | 1355280 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641664023 |
Product | hypothetical protein |
Protein accession | YP_001790303 |
Protein GI | 171057954 |
COG category | [S] Function unknown |
COG ID | [COG5343] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.000174467 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGTCGC TCGACCGCCT GTCCGAAGAC CTCGACCTGC TCGCCGGCGA GTACGTGCTC GGCACCCTGG CGCTGCGGCA GCGGCGTGCG CTCGAAGCCC GGCTCGCACA CGAACCGGCC CTGCGCGAGG CCGTGGAGCA ATGGCAGGCG CGGCTGCTGC CCGCCACCCA CCTGGCCGAG CCGGTGGCAC CGCCCGCGGC GCTATGGCAG CGCATCGAGG CCACGCTGGA TGCGCAATCG GGCGCTCGGC CGCAGGCCCG GCCGGCAGGG GCCAAGGCCG CGCACGGCCG TCTGGCCGCA CGCTGGTGGA ACAGCATCCA GGCCTGGCGC TGGCTCACCG GATCCGGCTA CGCGCTGGCC ACCGCACTGG CGCTGGTGCT GATGATGAAG ACCAGCGCGC CGCCGGCTGC GCCGCAGTTC CTGGTGGTGC TGGTGGCGCC GCAAGACAAG TCGCCCGGCT GGGTGGTGCA GGCCAGCACG AACCGCCAGA TCCGCCTGAT CCCGCTGGCC GTCGCGGCCG TGCCGGCCGA CAAGGCGCTC GAGTTCTGGA CCAAGGCCGA CGGCTGGAGC GGCCCGGTTT CGCTGGGGCT GGTGCGCCCG GGCGAGCCGC TGCAGATCCG GCTCGACAAG CTGCCGCCGC TGCAGGCCAA CCAGCTGTTC GAGCTCACTC TCGAGCCGCC CACCGGATCG CCGACCGGCA AGCCGACCGG GCCGATCCAG TTCATCGGGC GCGCGGTCGA GGTGCTGTGA
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Protein sequence | MKSLDRLSED LDLLAGEYVL GTLALRQRRA LEARLAHEPA LREAVEQWQA RLLPATHLAE PVAPPAALWQ RIEATLDAQS GARPQARPAG AKAAHGRLAA RWWNSIQAWR WLTGSGYALA TALALVLMMK TSAPPAAPQF LVVLVAPQDK SPGWVVQAST NRQIRLIPLA VAAVPADKAL EFWTKADGWS GPVSLGLVRP GEPLQIRLDK LPPLQANQLF ELTLEPPTGS PTGKPTGPIQ FIGRAVEVL
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