Gene Lcho_1267 details

Gene Information

• Locus tag: Lcho_1267
• ID: 6162884
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1353493
• End bp: 1354008
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641664021
• Product: blue (type1) copper domain-containing protein
• Protein accession: YP_001790301
• Protein GI: 171057952
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG4454] Uncharacterized copper-binding protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.00034808
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACACGCA AACGTCGTTC GATCGCCGCC GCCTGGCTGG TCGGCCTGCT GGCTGCCGGC 
ACGGTGCAGG CCCACGGCGA GAAGACCCAT GCGCAGAAGG CCGAGCCGGT GCGCATGGAA 
CAGAAGGACT GGGGCATCGC CGGCGACCCC AAAGCCGTGG TGCGCACCGT CGAGATCCGC 
ATGAGCGACA AGATGCGTTT CACGCCCGAT CGCATCGAGG TGCGCGAGGG CGAAACCATC 
CGCCTGGTGC ACCGCAACGG CGGCAAGATC CTGCACGAGT TCGTGCTCGG CACGAAACAG 
GAGCTCGAAG CCCACGCCGC GCTGATGCTG AAGTTTCCGG ACATGGAGCA CGACGAGCCC 
TACATGGTGC ACGTCGGCGC CGGCAAACGC GGCGAGATCG TCTGGCACTT CAATCGTGCC 
GGCGAGTTCG ACTTTGCCTG CCTGATCCCC GGCCATTACC AGGCCGGCAT GGTGGGCAAG 
ATCGTGGTGA CTGAACGAAA GGGGATCACG CAATGA 

 

Protein sequence

MTRKRRSIAA AWLVGLLAAG TVQAHGEKTH AQKAEPVRME QKDWGIAGDP KAVVRTVEIR 
MSDKMRFTPD RIEVREGETI RLVHRNGGKI LHEFVLGTKQ ELEAHAALML KFPDMEHDEP 
YMVHVGAGKR GEIVWHFNRA GEFDFACLIP GHYQAGMVGK IVVTERKGIT Q