| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1244 |
|---|
| Symbol | |
|---|
| ID | 6163920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1332021 |
|---|
| End bp | 1333250 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641663998 |
|---|
| Product | rare lipoprotein A |
|---|
| Protein accession | YP_001790278 |
|---|
| Protein GI | 171057929 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0797] Lipoproteins |
|---|
| TIGRFAM ID | [TIGR00413] rare lipoprotein A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.069168 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTACC CAGCCTGCCC GTCACCGACC CGCCCCGCCC ATCCCGCGGG CCTGAACCGC
CGCCCTGCAG CGGTGGCCGG GCCCGCCTGG CGATGGGCGG CGCCGGCCCT GGTCGCCGCC
CTGCTGACCG CCTGCGGCAG CGCGCCCAAG GTGGAAAGCC CCGCCGAACG CGCCAGCCGC
CCGGCCCCGA TCACCGAGCG CGACGGCCCC GAGGCCAACC CGCCGCCCGA CCTGCACAAG
GTGCCCGACG CCGAGCCCAA GGTCGAGGCG CTGCGGGTCG GCGGCCCCAA CAAGCCGTAC
GCCGTGCTCG GCCGACAGTA CACGCCGATG ACACGCGACG AGCCGGTGCT CGAACGCGGC
CTGGCCTCGT GGTACGGCCG CAAGTTCCAC GGCCGGCGCA CCGCCAGCGG CGAGGTCTAC
AACATGTACG CGATGACCGG GGCGCACCGC ACCTTCCCGA TCCCCAGCTA CGCGCGCATC
CGCAATCCGG CCAACGGCCG CGAGGTGATC GTGCGCATCA ACGACCGCGG GCCGTTCAAG
CGCGACCGGG TGGTCGACGT GTCGTATACC GCCGCGCTCA AGCTCGGCAT CCTCGGCGGC
GTGACGGAGG TCGAGGTCGA GCGCATCACC CACGAGGCGA TCCGCAACGG CACCTGGCGA
CGCGAGATGT CGACCGACGA GCCACCGTCG GCCGGCCAGC GCGCCACGCT GACGCTGGCG
CAGGCCCTCC AGGCCGAGGC GCCCATGGCC GCGCCGGCCA GCCCGGAGGA CACGTCGGCG
ACCCGTCCGG CCCCGACCGC CACCACACCG GCGCGCGAGC CGGAATGGGG CGATCGCCTG
GATGCGCCGC AGGCCACCGC CGCCGCCGAG CGCCCGCGCG CCGACGGTCC GCATGTCGCA
CCCGCATCCC CGTCCCAGGC GTCCGCCAGG GCCCTGCCGG CCCCTGCGCC CGTGACCTCG
ATCCTGCCCA CCGAACGCGC CGGCACGCAG GCCGCACGCG GCTGGTGGCT GCAGCTGGGC
GCGTTCAAGG CCTCGGAAGG CGCGGCGCAG TTCCAGCGCA AGGTGGCGAG CGATGCCGAG
TGGCTGGCGC CGCTGCTGGC GCAGTTCCGC GAAAGCGCCT TGCACAAGCT GCAGGCCGGG
CCCTTCCCGA GCCGAGACGA GGCGCTGGCC GCCAGCCAGC GGCTGCGCAC CCAGCTGCAG
CTGGTGCCGA TGCTGGTCGA GCGGCGCTGA
|
|---|
| Protein sequence | MSYPACPSPT RPAHPAGLNR RPAAVAGPAW RWAAPALVAA LLTACGSAPK VESPAERASR
PAPITERDGP EANPPPDLHK VPDAEPKVEA LRVGGPNKPY AVLGRQYTPM TRDEPVLERG
LASWYGRKFH GRRTASGEVY NMYAMTGAHR TFPIPSYARI RNPANGREVI VRINDRGPFK
RDRVVDVSYT AALKLGILGG VTEVEVERIT HEAIRNGTWR REMSTDEPPS AGQRATLTLA
QALQAEAPMA APASPEDTSA TRPAPTATTP AREPEWGDRL DAPQATAAAE RPRADGPHVA
PASPSQASAR ALPAPAPVTS ILPTERAGTQ AARGWWLQLG AFKASEGAAQ FQRKVASDAE
WLAPLLAQFR ESALHKLQAG PFPSRDEALA ASQRLRTQLQ LVPMLVERR
|
|---|
| |