Gene Lcho_1230 details

Gene Information

• Locus tag: Lcho_1230
• ID: 6163930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1317039
• End bp: 1317596
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 641663984
• Product: putative transmembrane protein
• Protein accession: YP_001790264
• Protein GI: 171057915

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 52
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCGCCTGC AACCCTGGTC CCGCCTGAGC CTGCGCTTGC GCCTGGGCCC GCTCGTGGCC 
GCGCTGCTGC TGGGCGTCGG TGCATGCCGG CCCGCGCTGG CGCTGGACGC CCATCCGCTC 
AAGGCCGCGG TGGTGTTCAA CCTGCTGGGT TTCGTGCAAT GGCCCGGCGA ATCCGATCTG 
CCGCCGATGA CGCCCCTGCG CCTGTGTGCC GAGCGCGGCG GCCCGCTGTG GCCCCATCTG 
CTGGCCTTGA ACGACCGCGT CGTGCGGCAG TTCCGGCTCG TGCTGCGCGA GCTGCCGGGC 
GCCGACAACG GCCCGCCCTG CGACGTCCTG CTGGTCGAGC GCGAGGGCGG TGCGCGTCGC 
CTGCCGGCGC GCACCGGGCC GCCGTCGCCG GTGCTGCTGA TCGGCGATGC CGAGGGCGGC 
GCCGAGCCGG GTGTCGTGAT CGCGCTGCAG ATGCGCGGCG ACCGCGTGGC GTTCGACATC 
GACCTGGCCG CCGCGCGGCG CAGCAGCCTG CAGGTCAGCT CCAAGCTCCT GCGCCTGGCC 
CGCAGCGTGC GCGAATGA 

 

Protein sequence

MRLQPWSRLS LRLRLGPLVA ALLLGVGACR PALALDAHPL KAAVVFNLLG FVQWPGESDL 
PPMTPLRLCA ERGGPLWPHL LALNDRVVRQ FRLVLRELPG ADNGPPCDVL LVEREGGARR 
LPARTGPPSP VLLIGDAEGG AEPGVVIALQ MRGDRVAFDI DLAAARRSSL QVSSKLLRLA 
RSVRE