| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1226 |
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| Symbol | |
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| ID | 6163926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1311999 |
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| End bp | 1312790 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641663980 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001790260 |
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| Protein GI | 171057911 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCG GCATTGCAGG CAGATGGGCG CTGGTGTGCG GCGCGAGCAA GGGCTTGGGC
TTGGGTTGCG CGCAGGCGCT GGCCGCCGAA GGCGTCAACC TGGTGATCAC CGCCCGCAAC
GAGGCCGCGC TGCAGCACAG CGCCGCCGAA TTGCGCCAGC GCCACCCGGC CGCACTGCAG
GTCCGCACGG TGGTGGGCGA CATCACCACG CCCGAGGGCC GCGCCGATGC GCTGGCGGCC
TGTCCGCAGG TCGACATCCT GGTCACCAAC GCCGGCGGTC CGCCGACCGG CGATTTCCGC
GACTGGGACC GCGAGGCCTG GCTGCGGGCG CTCGATGCCA ACATGCTCAC GCCGATCGAG
CTGATGCGCG CCACCGTCGA CGCGATGGCC GCGCGCGGCT ACGGCCGCGT CATCAACATC
ACCTCGGCCG CGGTGAAGGC GCCGATCGAC ATCCTCGGCC TGTCCAACGG CGCGCGCAGC
GGCCTGACCG GTTTCGTCGC CGGACTGGCG CGCCAGCCGC AGCTGGCGCA GAACGACGTC
ACGATCAACA ACCTGATGCC GGGCGCTTTC GATACCGACC GGCTGCGCGC CACCTTCGAC
GGCGCCGCGG CCAAGACGGG GCGCACCGTC GAGGCCTTGC GCGGGGCTCG CGCGCAGGCC
ATCCCGGCAC GGCGCTTCGG CCGGCCCGAC GAGTTCGGCG CCTACTGCGC CTTCCTGTGC
AGCCCGATGG CCGGCTACAT CACCGGCCAG AACCTGCTGA TCGACGGCGG CGCCTACCCC
GGCACGTTCT GA
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| Protein sequence | MDLGIAGRWA LVCGASKGLG LGCAQALAAE GVNLVITARN EAALQHSAAE LRQRHPAALQ
VRTVVGDITT PEGRADALAA CPQVDILVTN AGGPPTGDFR DWDREAWLRA LDANMLTPIE
LMRATVDAMA ARGYGRVINI TSAAVKAPID ILGLSNGARS GLTGFVAGLA RQPQLAQNDV
TINNLMPGAF DTDRLRATFD GAAAKTGRTV EALRGARAQA IPARRFGRPD EFGAYCAFLC
SPMAGYITGQ NLLIDGGAYP GTF
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