Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1203 |
Symbol | |
ID | 6161153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1289947 |
End bp | 1290744 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641663957 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001790237 |
Protein GI | 171057888 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTATCG CCATCGTTAC TGGTGCCGCC GACGGCATCG GCTGGGCCAC CGCACAACGG TTTGCAGCCG GCGGTGCCCG CGTGGTGCTG GCTGACCTGC GTGGTGAGTC CGCCCGCGAG CGCGCTGCCG AGCTGGGCGC CGCCCACATC GGGCTGGCTT GCGACGTGAC GTCCGAAGCA TCGGTCATCT CGCTGGTCGA GCAGGTGCTG TCGCAATGCG GGCGCATCGA CGTGCTGGTC AACAACGCCG GCATCGGCGA CCAGGGCGGC GCCACGGTCG ACCAGAGGCT CGATGCCTTC GACCGCGTGC TCGGCGTGCA CCTGCGCGGC ACCTTCCTGA TGAGCCGCGA AGTGGCCCGC GTGATGCTGG CGCAGGCGCC GCTGGAGGGC CCGCACGGCT GCCGCGGCGC GATCGTCAAC ATCGCCTCGA TCGTCGCATC GGCCGGCATT CCGGGCCGCA ACGCCTACGG GGCGGCCAAG GCCGGCATCG TCGGCATGAC GAAGGCGATG GCGGTCGAGT GGGGCCTGGC GGGTGTGCGC GTCAACGCGG TCGCGCCGGG TTATGTGCGC ACCGCGCTGG TCGAGAAGTT GCAGGCCGAG GGCCTGCTCA ACACCGACGC CATCCACGCC CGCACGCCGA TGGGCCGCAT GGGCGCGCCG GCCGAGATTG CCGAGGCGAT CGCCTTCCTG GCCTCGCCGC AGGCCAGCTA CATCACCGGC TCGGTGCTGC AGGTCGACGG CGGCTGGATC GCCCATGGCG GCGCGATTCC GTCGGTGCCG CCGGTGGTGG CGTCCTGA
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Protein sequence | MTIAIVTGAA DGIGWATAQR FAAGGARVVL ADLRGESARE RAAELGAAHI GLACDVTSEA SVISLVEQVL SQCGRIDVLV NNAGIGDQGG ATVDQRLDAF DRVLGVHLRG TFLMSREVAR VMLAQAPLEG PHGCRGAIVN IASIVASAGI PGRNAYGAAK AGIVGMTKAM AVEWGLAGVR VNAVAPGYVR TALVEKLQAE GLLNTDAIHA RTPMGRMGAP AEIAEAIAFL ASPQASYITG SVLQVDGGWI AHGGAIPSVP PVVAS
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