Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1193 |
Symbol | |
ID | 6162973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1279553 |
End bp | 1280737 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641663947 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001790227 |
Protein GI | 171057878 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCCA CCGCACGCGC CAGCTTCCAT TGGGACGACC CGCTGCTGCT CGACCTGCAG CTGACCGACG ACGAACGCGC GGTGCGCGAC GCCGCCCGCG CCTACAGCCA GGACCGCCTG CTGCCGCGTG TGCTCGACGC CTTCCGCAAC GAGAGCACCG ATCCGGCGAT CTTCCGCGAA ATGGGCGAGC TGGGCCTGCT CGGCGCCACC ATCCCCGAGG CTTACGGCGG CGCCGGCCTG AACTACGTCT GCTACGGTCT GGTGGCGCGC GAGGTCGAAC GCGTCGACTC GGGTTATCGC TCGATGATGA GCGTGCAGAG CTCGCTGGTG ATGGTGCCGA TCAACGAGTT CGGCAACGAA GCCACCAAGC AGAAATACCT GCCCAAGCTC GCGCGCGGCG AGTGGATCGG CTGCTTCGGC CTGACCGAGC CGAACCACGG ATCCGACCCG GGCAGCATGA TCACGCGGGC GAAGAAAGTA CCCGGCGGCT ACTCGTTGAG CGGCGCCAAG ATGTGGATCA CCAACTCGCC GATTGCCGAC GTGTTCGTGG TCTGGGCGAA AGACGATGAA GGCGCCATCC GCGGCTTCGT GCTGGAGAAG GGCTGGAAAG GCCTGAGCGC ACCCGCGATC CACGGCAAGG TCGGCCTGCG TGCCTCGATC ACCGGCGAGA TCGTGATGGA CGAGGTCTTC TGCCCCGAAG AGAACGCCTT CCCCGACGTG CGCGGCCTCA AAGGCCCGTT CACCTGCCTG AACAGCGCCC GCTACGGCAT CGCCTGGGGC GCACTCGGCG CGGCCGAAGA CTGCTTCCAG CGCGCCCGCC AGTACACGAT GGACCGCAAG CAGTTCGGCA AGCCGCTGGC GGCCAATCAG CTGATCCAGA AGAAGCTGGC CGACATGCTG ACCGACATCA GCCTCGGCCT GCAAGGCTGC CTGCGGCTGG GCCGCATGAA GGACGAAGGC AGCGCGTCGG TCGAGGTCAC CTCGATCATG AAGCGCAACA GCTGCGGCAA GGCGCTGGAC ATCGCCCGCG TGGCGCGCGA CATGCTCGGC GGCAACGGCA TCAGCGACGA GTTCGGCGTG GCGCGCCACC TGGTCAACCT CGAAGTGGTC AACACCTACG AGGGCACGCA CGACGTGCAT GCGCTGATCC TCGGCCGCGC CATCACCGGC CTCGCGGCCT TCTGA
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Protein sequence | MTSTARASFH WDDPLLLDLQ LTDDERAVRD AARAYSQDRL LPRVLDAFRN ESTDPAIFRE MGELGLLGAT IPEAYGGAGL NYVCYGLVAR EVERVDSGYR SMMSVQSSLV MVPINEFGNE ATKQKYLPKL ARGEWIGCFG LTEPNHGSDP GSMITRAKKV PGGYSLSGAK MWITNSPIAD VFVVWAKDDE GAIRGFVLEK GWKGLSAPAI HGKVGLRASI TGEIVMDEVF CPEENAFPDV RGLKGPFTCL NSARYGIAWG ALGAAEDCFQ RARQYTMDRK QFGKPLAANQ LIQKKLADML TDISLGLQGC LRLGRMKDEG SASVEVTSIM KRNSCGKALD IARVARDMLG GNGISDEFGV ARHLVNLEVV NTYEGTHDVH ALILGRAITG LAAF
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