Gene Lcho_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1193 
Symbol 
ID6162973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1279553 
End bp1280737 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content67% 
IMG OID641663947 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001790227 
Protein GI171057878 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCCA CCGCACGCGC CAGCTTCCAT TGGGACGACC CGCTGCTGCT CGACCTGCAG 
CTGACCGACG ACGAACGCGC GGTGCGCGAC GCCGCCCGCG CCTACAGCCA GGACCGCCTG
CTGCCGCGTG TGCTCGACGC CTTCCGCAAC GAGAGCACCG ATCCGGCGAT CTTCCGCGAA
ATGGGCGAGC TGGGCCTGCT CGGCGCCACC ATCCCCGAGG CTTACGGCGG CGCCGGCCTG
AACTACGTCT GCTACGGTCT GGTGGCGCGC GAGGTCGAAC GCGTCGACTC GGGTTATCGC
TCGATGATGA GCGTGCAGAG CTCGCTGGTG ATGGTGCCGA TCAACGAGTT CGGCAACGAA
GCCACCAAGC AGAAATACCT GCCCAAGCTC GCGCGCGGCG AGTGGATCGG CTGCTTCGGC
CTGACCGAGC CGAACCACGG ATCCGACCCG GGCAGCATGA TCACGCGGGC GAAGAAAGTA
CCCGGCGGCT ACTCGTTGAG CGGCGCCAAG ATGTGGATCA CCAACTCGCC GATTGCCGAC
GTGTTCGTGG TCTGGGCGAA AGACGATGAA GGCGCCATCC GCGGCTTCGT GCTGGAGAAG
GGCTGGAAAG GCCTGAGCGC ACCCGCGATC CACGGCAAGG TCGGCCTGCG TGCCTCGATC
ACCGGCGAGA TCGTGATGGA CGAGGTCTTC TGCCCCGAAG AGAACGCCTT CCCCGACGTG
CGCGGCCTCA AAGGCCCGTT CACCTGCCTG AACAGCGCCC GCTACGGCAT CGCCTGGGGC
GCACTCGGCG CGGCCGAAGA CTGCTTCCAG CGCGCCCGCC AGTACACGAT GGACCGCAAG
CAGTTCGGCA AGCCGCTGGC GGCCAATCAG CTGATCCAGA AGAAGCTGGC CGACATGCTG
ACCGACATCA GCCTCGGCCT GCAAGGCTGC CTGCGGCTGG GCCGCATGAA GGACGAAGGC
AGCGCGTCGG TCGAGGTCAC CTCGATCATG AAGCGCAACA GCTGCGGCAA GGCGCTGGAC
ATCGCCCGCG TGGCGCGCGA CATGCTCGGC GGCAACGGCA TCAGCGACGA GTTCGGCGTG
GCGCGCCACC TGGTCAACCT CGAAGTGGTC AACACCTACG AGGGCACGCA CGACGTGCAT
GCGCTGATCC TCGGCCGCGC CATCACCGGC CTCGCGGCCT TCTGA
 
Protein sequence
MTSTARASFH WDDPLLLDLQ LTDDERAVRD AARAYSQDRL LPRVLDAFRN ESTDPAIFRE 
MGELGLLGAT IPEAYGGAGL NYVCYGLVAR EVERVDSGYR SMMSVQSSLV MVPINEFGNE
ATKQKYLPKL ARGEWIGCFG LTEPNHGSDP GSMITRAKKV PGGYSLSGAK MWITNSPIAD
VFVVWAKDDE GAIRGFVLEK GWKGLSAPAI HGKVGLRASI TGEIVMDEVF CPEENAFPDV
RGLKGPFTCL NSARYGIAWG ALGAAEDCFQ RARQYTMDRK QFGKPLAANQ LIQKKLADML
TDISLGLQGC LRLGRMKDEG SASVEVTSIM KRNSCGKALD IARVARDMLG GNGISDEFGV
ARHLVNLEVV NTYEGTHDVH ALILGRAITG LAAF