Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1127 |
Symbol | |
ID | 6163741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1206764 |
End bp | 1207423 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641663881 |
Product | SNARE associated Golgi protein |
Protein accession | YP_001790161 |
Protein GI | 171057812 |
COG category | [S] Function unknown |
COG ID | [COG0586] Uncharacterized membrane-associated protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.325402 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATGGA TAACCCTCTT GATCGACTTC GTGCTGCACG TCGACCAGCA CCTCAACCAG TTCGTGACCG ATCACGGCGC CTGGATCTAT GTCTTGCTGT TCGCGATCAT CTTCGTCGAG ACCGGCCTGG TGGTGATGCC GTTCCTGCCG GGCGACTCGC TGCTGTTCGT GGTCGGCACG ATGTGCGGCC TGGGCCTGCT GAGCCTGCCG CTGACCATCG CGCTGCTGCT GGTGGCGGCG ATCCTGGGCG ACCAGCTCAA CTACAGCATC GGCCAGCGCC TGGGGCCGCG GGTGTTCCAG TGGGAGCAGT CGCGCTTCTT CAACAAGCGC GCCTTCCTGC AGGCGCACGC GTTCTACGAG CGCTACGGCG GCATCACGAT CGTGCTGGCG CGCTTCATGC CGTTCATCCG CACCTTCGCG CCCTTCGTGG CCGGCGTGGC AGCGATGTCC CGGCTGCGTT TCGCGATGTA CAACTGCATC GGCGCGCTGC TGTGGGTGGT GGGCATCACG GTCGCCGGCT ACCTGTTCGG CAACGTGCCG TGGGTGAAGA TGAACCTCGA GAAGATCATC TGGGCGCTGC TGATCGTGCC CGGCCTGCTG GCGATCTTCG GCGCCTGGCG CGCCCGCAAG CGCGAAAGCA GCCCGGTCGG CCAGACCTGA
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Protein sequence | MEWITLLIDF VLHVDQHLNQ FVTDHGAWIY VLLFAIIFVE TGLVVMPFLP GDSLLFVVGT MCGLGLLSLP LTIALLLVAA ILGDQLNYSI GQRLGPRVFQ WEQSRFFNKR AFLQAHAFYE RYGGITIVLA RFMPFIRTFA PFVAGVAAMS RLRFAMYNCI GALLWVVGIT VAGYLFGNVP WVKMNLEKII WALLIVPGLL AIFGAWRARK RESSPVGQT
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