| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1122 |
|---|
| Symbol | |
|---|
| ID | 6162144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1198519 |
|---|
| End bp | 1199316 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641663876 |
|---|
| Product | HpcH/HpaI aldolase |
|---|
| Protein accession | YP_001790156 |
|---|
| Protein GI | 171057807 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3836] 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.597094 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAGA ACCGCCTGCG CACGCTGTGG CGCAACGACC AGGCCGCCGT CAACGGCTGG
CTGGCCATCC CCGACAGCTT CTCTGCCGAG GTGATGGCGC ATCAGGGCTG GGACACGCTG
ACCATCGACC TGCAGCACGG CGTGGTCGAC TACCCGGCGA TGGTGACGAT GCTGCAGGCG
ATCTCCACCA CCGCCACGGT GCCGATCGTG CGCGTGCCGT GGCTGGAGCC CGGCATCATC
GGCAAGACGC TCGACGCCGG CGCCTACGGG ATCATCTGCC CGATGGTCAA CAGCCGCGAG
GACGCGCAGA AGCTGGTGGC CTACAGCCAC TACGCGCCGC GTGGCACCCG CAGCTTCGGC
CCGGTGCGCG CCACGTTGTA CGCCGGCGCC GACTACCCGC AGCACGCCAA CGACACCATC
GTCACCTTCG CCATGATCGA GACCGCGCAG GCGCTCGACA AGCTCGATTC GATCCTGTCG
GTCGAGGGGT TGGACGCGAT CTACATCGGG CCGTCGGACC TGTCGCTGTC GATGGGCTGC
CGGCCGGTGT TCGACGACGT CGACCCGCCG GTGGCGCAGG CGATCGAGCA CATCCTCGAA
CGCGCCACCG CGCACGGCCT GAAGGCCGGC ATCCACAACG GCGTGCCCGA GGGCGCGCTG
GCGCGGGTCG CCAAGGGCTT CCGCTTCGTC ACAGTCAGCT CGGATGCGCG GCTGATGGCG
GCGGGCTCGC AGCAGGTGCT GGCGCAGATG CGCGCTGCGC CGGCTGCCGT GGCGGGCACG
GGCTCGGCCA CTTACTGA
|
|---|
| Protein sequence | MRENRLRTLW RNDQAAVNGW LAIPDSFSAE VMAHQGWDTL TIDLQHGVVD YPAMVTMLQA
ISTTATVPIV RVPWLEPGII GKTLDAGAYG IICPMVNSRE DAQKLVAYSH YAPRGTRSFG
PVRATLYAGA DYPQHANDTI VTFAMIETAQ ALDKLDSILS VEGLDAIYIG PSDLSLSMGC
RPVFDDVDPP VAQAIEHILE RATAHGLKAG IHNGVPEGAL ARVAKGFRFV TVSSDARLMA
AGSQQVLAQM RAAPAAVAGT GSATY
|
|---|
| |