Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1118 |
Symbol | |
ID | 6162140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1193738 |
End bp | 1195072 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641663872 |
Product | glucarate dehydratase |
Protein accession | YP_001790152 |
Protein GI | 171057803 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.958385 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTCCA ACGCTACCCC CGTCGTCGTG GCCCTGCGTG TCGTGCCGGT GGCCGGCCGC GACAGCATGC TGCTCAACCT GAGCGGTGCG CACGCGCCGT ACTTCACCCG CAACCTGCTG ATCCTGACCG ACAGCGCCGG CCGCACCGGC GTGGGCGAGG TGCCGGGCGG CGAGCCGATC CGGCGCACGC TCGAAGACGC CGCCGCGCTG GTGGTGGGCG CCAAGGTGGG CGACTGGCAG CGCGTGCTCA ACGCCGTGCG CACGCAGTTC GCCGACCGCG ATTCGGGCGG GCGCGGCCTG CAGACCTTCG ACCTGCGCAC CACGATCCAC GCGGTCACCG CGGTCGAGTC GGCGCTGCTC GACCTGCTCG GCCAGCACCT CGAGGTGCCG GTGTGCGCGC TGCTCGGCGA AGGCCAGCAG CGCGACAGCG TGCCGATGCT CGGCTACCTG TTCTACATCG GCGACCGCAA CAAGACCGAT CTGCCGTACG ACAGCGCGCC CGACGCTGCC GACCCCTGGC TGCGCCTGCG CCACGAGGAG GCGATGACAC CCGACGCGGT GGTCGCACTG GCCGAAGCCG CGCAGGCGCG CTACGGTTTC CACGACTTCA AGCTCAAGGG CGGCGTGCTG CGCGGCGAGG AAGAGGTCGA GGCGATCCGC GCGCTGAAAG CGCGTTTCCC GCAGGCCCGC ATCACGCTCG ACCCCAACGG CGGCTGGTTG CTCAAGGACG CGACCCGCCT GATGCGCGAC ATGCACGGCG TGCTCGCCTA CGCCGAAGAC CCGTGCGGTG CCGAGGGCGG CTTCTCGGGC CGCGAGGTGA TGGCCGAGTT CCGCCGCGCT ACCGGCCTGC CGACCGCCAC CAACATGGTC GCCACCGACT GGCGCCAGAT GGTGCATTCG CTGAGCCTGC AGAGCGTCGA CATCCCGCTC GCCGACCCGC ATTTCTGGAC CATGCAAGGT GCGGTGCGGG TGGCGCAGAC CTGCCGCGAT TTCGGCCTGA CCTGGGGTTC GCACTCCAAC AACCACTTCG ACGTGTCGCT GGCGATGTTC ACGCAGGCCG CGGCTGCTGC GCCGGGGCGT GTCACCGCGA TCGACACCCA CTGGATCTGG CAGGACGGCC AGAACCTGAC GCAAAAACCG CTGCAGATCG TCGACGGCGA AGTGGCCGTG CCGACCGTGC CGGGCCTGGG CGTCGAGCTC GACATGGACG CGGTCGAGGC CGCGCACCAG CTCTACCTGC AGCACGGCCT GGGCTCGCGC GACGACGCCA CGGCGATGCA GTACCTGATC CCGAACTGGA CCTTCGACCC CAAGCGCCCG TGCCTGGTGC GCTGA
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Protein sequence | MSSNATPVVV ALRVVPVAGR DSMLLNLSGA HAPYFTRNLL ILTDSAGRTG VGEVPGGEPI RRTLEDAAAL VVGAKVGDWQ RVLNAVRTQF ADRDSGGRGL QTFDLRTTIH AVTAVESALL DLLGQHLEVP VCALLGEGQQ RDSVPMLGYL FYIGDRNKTD LPYDSAPDAA DPWLRLRHEE AMTPDAVVAL AEAAQARYGF HDFKLKGGVL RGEEEVEAIR ALKARFPQAR ITLDPNGGWL LKDATRLMRD MHGVLAYAED PCGAEGGFSG REVMAEFRRA TGLPTATNMV ATDWRQMVHS LSLQSVDIPL ADPHFWTMQG AVRVAQTCRD FGLTWGSHSN NHFDVSLAMF TQAAAAAPGR VTAIDTHWIW QDGQNLTQKP LQIVDGEVAV PTVPGLGVEL DMDAVEAAHQ LYLQHGLGSR DDATAMQYLI PNWTFDPKRP CLVR
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