| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1106 |
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| Symbol | |
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| ID | 6161307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1180578 |
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| End bp | 1182770 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663860 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001790140 |
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| Protein GI | 171057791 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.148996 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAACA CGCCTTCGTT TGCAGCCCAC GTGGTGTTCC TGATCCGGCG CGTGCCCATC
GCCGCACGCC TGGTGGCCGC CTTCGGCCTG GTGCTGCTGC TGCTGGGCCT GATGCTGGCG
CAGGCGCTCG GCCACACCGC CACGATGAAC GACGCCGTGC ACCGCATCAC GCAGGGCACG
CTCAACCAGG TGATGCTGGC GCACCGCACG CAGACCGCCG CGCACGTGGG TGTCGAGCAG
CTGTATTCGC TGTTCGTGCT CGATCAGCGC GAGCTGCGCG TGCCCGTCTA CGCCCAGATC
GACCAGGCCG CGCGCGATCA GCAGGAGGCC TTCGACGCCC TGCTGGCCGA GACCGGGCTG
GGCCGCAACG AGCCGGTGAT CGCCCGGGTG CTGCAGGACC GCGCGCGTTA TGTCGAAGCC
TTCGACGAGA CCGTCTCGCT GGTCGAGCTC GACCCCGCAC TGGCGCGGCC GGTGATGGTG
TCGCAGACCA TGCCGGCGCT GCGCAGCATG CTGGCCGCGC TCGACATGCT GGTGGCGCAC
AGCTCCAGAC GCGCCGGCGA CGACCTCGCC AGCCTGCACG ATCTGCACGG CCAGGTGCGC
GCCCGGCTCT GGTTCGTCGG CGTGCTGGCG GTGCTGGTGG CGCTGGCATC GGCGGCACTG
ATCACGCATT CGATCGCCAA GCCGTTGCGC TCGGCGGTGA CGCTGGCCGG CCACATCTCG
GCCGGCCGCA TCGACACGCC GCTGCCACCG GCGGCCAGCG ACGAGGTCGG CGTGCTGACG
CAGGCGATGG ACGACATGCG CCAGAACCTG GCACGCCGCG AGGCCCGCAT CGCCGAGCTG
GCCTACCGCG ACGACCTCAC CGGCCTGGCC AACCGCACGC TGTTCAACGA CCGCCTCGAT
CAGGCGCTGG CCAGCGCGCG CCGGCAGGGC AATGCGCTGT CGGTGCTGGT GCTCGACCTC
GACCGCTTCA AGCAGGTCAA CGACGTGCTC GGCCACACCC TCGGCGACCA GGTCCTGAAG
GAGGTGGGCG AGCGCCTGCG CAACGCGCTG ATGCGCACCA CCGACACCGT GGCGCGGCTG
GCCGGCGACG AGTTCGCGGT GCTGCTGCCG ACCCAGGACC ACGCCGCCGC GACGGCGCTC
GGCCGACGCC TGCTGTCGGT GCTCGAGAGC CCCGTGCCGG TGCAGGGCCA GCGGGTCGAC
GTCAGCGCCA GCATCGGCAT CGCCTGCGCC GACGACGCCG GCCTGAGCGC AGCCCAGCTG
ATGGCACGCG CGGACATCGC CATGCACGAG GCCAAGCAGG GCAACCGCGG CCTGCTGGTG
TTCGAGGCGG CGATGGAGCG CCACGTCGAA CACGGTCTGA CGCTGCTGAG CGACCTGCGC
CGCGCCGCCG ATCAGCACGA GTTCTTCCTG CTCTACCAGC CCAAGCTGCG GCTGTCCGAC
GGCCACTGCG ACGCCGCCGA GGTGCTGATC CGCTGGCGCC ACCCGCAGCG CGGCATCGTG
CCGCCGGACC GTTTCATCCC GTTTGCCGAG CAGACCGGCG CGATCAAGGC GATCACGCTG
TGGGTGCTGC AGCACGCGCT GAACCAGCTG GCGAGCTGGC AGCAGCTGGG CTGGCAGCTG
TCGCTCAACA TCAACGTCTC GACCCGCGAC CTCGGCCAGC CCGACTTCCC GGCCCTGGTC
GACAACGCCC TGCGGCGCGC CGGCGTGGCC GCCGCCAGCC TATGCCTCGA AGTGACCGAG
AGCGCCATCA TGGACGACCC GGCGCAGGCG CTGCGCTGCC TGCAGGCGCT CAACGAGATG
GGCGTGCGGC TGTCGATCGA CGACTTCGGC ACCGGCTACT CGTCGCTCGC CTACCTGAAG
AAGCTGCCGG TGCAGGAGCT CAAGATCGAT CGCTCCTTCG TCAGCGGCCT CGACCGCGAC
GAGGCCGACG TGACCATCGT GCGCTCGACC ATCGACCTGG CCCACCACAT GGGCCTGGCC
GTGGTGGCCG AGGGCATCGA GACCGAGGCG GTCAGCCAGC GCCTGCGCAG CTTCGGCTGC
GACCAGGCGC AGGGTTATCT GTACAGCCGG CCGCTGCCGG CGATGGAGTT CATCGCCTGG
CTGAAGCAGC ATCGTTTCCC GGCCGGATCG GGCATCGGCG CGAAGCCCGA CGGCCGTGCC
GGAATGCCGG CCGGTCCCCT GATCGCCGCC TGA
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| Protein sequence | MPNTPSFAAH VVFLIRRVPI AARLVAAFGL VLLLLGLMLA QALGHTATMN DAVHRITQGT
LNQVMLAHRT QTAAHVGVEQ LYSLFVLDQR ELRVPVYAQI DQAARDQQEA FDALLAETGL
GRNEPVIARV LQDRARYVEA FDETVSLVEL DPALARPVMV SQTMPALRSM LAALDMLVAH
SSRRAGDDLA SLHDLHGQVR ARLWFVGVLA VLVALASAAL ITHSIAKPLR SAVTLAGHIS
AGRIDTPLPP AASDEVGVLT QAMDDMRQNL ARREARIAEL AYRDDLTGLA NRTLFNDRLD
QALASARRQG NALSVLVLDL DRFKQVNDVL GHTLGDQVLK EVGERLRNAL MRTTDTVARL
AGDEFAVLLP TQDHAAATAL GRRLLSVLES PVPVQGQRVD VSASIGIACA DDAGLSAAQL
MARADIAMHE AKQGNRGLLV FEAAMERHVE HGLTLLSDLR RAADQHEFFL LYQPKLRLSD
GHCDAAEVLI RWRHPQRGIV PPDRFIPFAE QTGAIKAITL WVLQHALNQL ASWQQLGWQL
SLNINVSTRD LGQPDFPALV DNALRRAGVA AASLCLEVTE SAIMDDPAQA LRCLQALNEM
GVRLSIDDFG TGYSSLAYLK KLPVQELKID RSFVSGLDRD EADVTIVRST IDLAHHMGLA
VVAEGIETEA VSQRLRSFGC DQAQGYLYSR PLPAMEFIAW LKQHRFPAGS GIGAKPDGRA
GMPAGPLIAA
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