Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1104 |
Symbol | |
ID | 6160597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1177088 |
End bp | 1178767 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641663858 |
Product | Na/Pi-cotransporter II-related protein |
Protein accession | YP_001790138 |
Protein GI | 171057789 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1283] Na+/phosphate symporter |
TIGRFAM ID | [TIGR00704] Na/Pi-cotransporter [TIGR01013] Phosphate:Na+ Symporter (PNaS) Family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.178797 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCCACC TGCTCAATCT CCTGGCCGCC ATCGCCCTGC TGGTGTGGGC GACCCAGATC GTGCGCACCG GCGTGCTGCG CCTGTTCGGC GAAGACCTGC GCCGGATGCT CGCCGCCAGC ATGGGCGCCT GGCCCAAGGC GATGCTGGCG GGCCTGGGCG TGACCTGCCT GGTGCAGTCG AGCACCGCCA CCGCGCTGAT CGTGTCGTCG TTCGTCGGTC GCGGCCTGGT GGCCACCGCG CCGGCGCTGG TGGTGATGCT GGGCGCCGAT GTCGGCACCA GTGTGATGGC GCTGGTCTAC TCGTTCGACC TGTCGTGGCT GTCGCCGCTG CTGATCTTCA TGGGCGTGAT CACCTACGTG TCGCGCGAGA AGACCAGCAC CGGCCGGGTC GGCCAGATCT CGATCGGCCT GGGCCTGATC ACGCTGGCGC TGCAGCTGAT CGTCGCCAAC ACCGGGCCGC TGGTGCAGGC GCCGCTGGTG CGCACGCTGC TGGTCACGCT GCCCAACGAC CTGCCGATGG AGCTGCTGGT CGGCGCCTTG CTTGCGATGG CCAGCTATTC GAGCCTGGCC GTCGTGCTGC TGGTGGCGAC GCTGGCCGAC CAGGGCCTGG TGCCGGTGCC GACCGCGCTG GGCCTGGTGC TGGGCGCCAA CATCGGCCGC GCGGCGGTGT CGATGCTGTC GGTCTGGCGC TCCGATGTCG CCACCCGTCG GCTGCCGCTG GGCAACCTGC TGTTCAAGGG GCTGGCGGTG CTGCTGATCG CGCCGTTCCT GGGCCTGGTG CACGTCTGGC TGCAGGACGG CATCGGCGTG GTGCTGATGC AGGTGGTGCT GTTCAACCTG GCGTTCAACG CCGCGCAGGC GATCCTGTTC GTGCCCTTCA CCGGCCTGCT GGCCGCTGCG CTGGAGCGCT GGCTGAAGGT GCCGCCCAGC ACCGACGATC GCGCGCCGCG CCACCTCGAC AAGCTCGCGC TCGGCACGCC GTCGATCGCG CTGAGCTGCG CCGCCCGCGA GGCGCTGCGC CAGGCCGATG CGGTCGAGAC CATGCTGCGC GGCGTGCTGC CGGTGATCCG CAACAACGAC CTCGATCTGG CCGCCCGGCT GCGCCAGATG GAAGAAGTGG TCGACGCGCT CTACACCGCC ATCAAGCTCT ACCTGACGCA GGTCTCGCGC ACCGCCTTGT CCGAGCGCGA GAGCCAGCGC TGGACCGAGA TCGTCTCGTT CACGATCAAC ATGGAGCAGA TCGGCGACAT CATCGAGCGC GTGCTGCAGG ACGTCGAGGA CAAGAAGATC CGCAAGCAGC GCAGCTTCTC GGACGCCGGC ATGGCCGAGA TCACGCACCT GCACGAGCGC CTGCTCGCCA ATCTGCGGCT GGGCATGAGC GTGTTCCTCG ACGGCCATGT GCGCGATGCG CAGAAGCTGC TCGAGGAGAA GGCGCGCTTT CGCGAGCTGG AGCACGAATA CGCCTCCACC CACCTGAACC GGCTGCAGGA CAACACCGCC GCCAGCATCG AGACCAGCTC GCTGCACCTC GACCTGATCA GCGAGCTCAA GCGCATCAAC TCGCACATCT GCTCGATCGC CTACCCGATC CTCGAACCCG CCGGCGCGCT GACGCCGACG CGGCTGCGCG CCTCGCGCAT GGGCGGGCTG GACGAAGAGG TGCGGGCGCA CGCCCGCTGA
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Protein sequence | MLHLLNLLAA IALLVWATQI VRTGVLRLFG EDLRRMLAAS MGAWPKAMLA GLGVTCLVQS STATALIVSS FVGRGLVATA PALVVMLGAD VGTSVMALVY SFDLSWLSPL LIFMGVITYV SREKTSTGRV GQISIGLGLI TLALQLIVAN TGPLVQAPLV RTLLVTLPND LPMELLVGAL LAMASYSSLA VVLLVATLAD QGLVPVPTAL GLVLGANIGR AAVSMLSVWR SDVATRRLPL GNLLFKGLAV LLIAPFLGLV HVWLQDGIGV VLMQVVLFNL AFNAAQAILF VPFTGLLAAA LERWLKVPPS TDDRAPRHLD KLALGTPSIA LSCAAREALR QADAVETMLR GVLPVIRNND LDLAARLRQM EEVVDALYTA IKLYLTQVSR TALSERESQR WTEIVSFTIN MEQIGDIIER VLQDVEDKKI RKQRSFSDAG MAEITHLHER LLANLRLGMS VFLDGHVRDA QKLLEEKARF RELEHEYAST HLNRLQDNTA ASIETSSLHL DLISELKRIN SHICSIAYPI LEPAGALTPT RLRASRMGGL DEEVRAHAR
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