Gene Lcho_1091 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1091 
Symbol 
ID6161518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp1164193 
End bp1164882 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content66% 
IMG OID641663845 
Producthypothetical protein 
Protein accessionYP_001790125 
Protein GI171057776 
COG category 
COG ID 
TIGRFAM ID[TIGR02595] PEP-CTERM putative exosortase interaction domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCC CGCGTCCAGC CCGTCGCGAG CCGTCCCGGT CGATCGGCGC CAAGGTGGGT 
CGGACGATCG CCCTGGCATT CACCCTCGGT GTCGGTGCCA CTGCGGCGCA GGCCGAACTC 
GTTTCGTCCA CGCTGTCATT CGACAGCCTC GGTGCCAGCA CCTTGGGTGT GCCGGTTCCT 
GCCGGACACG GGGGTTTCGA CTGGGGCAGC CAGTGGTTCT CGATGACCAC AGCCGGAGCG 
CCTGGCGAAA CGTTCCTGGC GACGAGCCTT GCGGGCAGCA CGCGGATCAC CCGCAGCGAC 
CACGGTGACT TCTTCTTCGA CGGCGCGGAC TTCTGGAGCC GGCGCAGCGT CGACAGCACC 
GGCGACTTCC ACTTCATGCT CTACAACGAC GGCAAGGTGG TCTACGACGG GGTTGCGCTG 
AAGGACAAGA GGGTGTTCAA GGGGACGGCC AGCTTCATGA GCGTCGCAGC CGGAACGCCG 
ATCGACGCGA TCGCCTTCGC CTTCGACAAC GACGACTACG ACCATCTGGC GATGGACAAC 
TTCCGGTTCC GCATCGACGC AACGGCTGCG GGATCGGTCA CGGCGGTGCC TGAACCCCAC 
ACGACCGCCA TGCTGCTGGC CGGCCTGGGC GTGATCGGCG TGATGGGCCG CCGGCGGCGG 
CAGCACCAGA CTCAATCCGA AAAGCTGTAA
 
Protein sequence
MSIPRPARRE PSRSIGAKVG RTIALAFTLG VGATAAQAEL VSSTLSFDSL GASTLGVPVP 
AGHGGFDWGS QWFSMTTAGA PGETFLATSL AGSTRITRSD HGDFFFDGAD FWSRRSVDST 
GDFHFMLYND GKVVYDGVAL KDKRVFKGTA SFMSVAAGTP IDAIAFAFDN DDYDHLAMDN 
FRFRIDATAA GSVTAVPEPH TTAMLLAGLG VIGVMGRRRR QHQTQSEKL