Gene Lcho_1056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1056 
Symbol 
ID6163134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1126259 
End bp1126921 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content70% 
IMG OID641663810 
Productribose-5-phosphate isomerase A 
Protein accessionYP_001790090 
Protein GI171057741 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCAAG ACGAACTCAA GGCCCTGGTG GGCCAGGCCG CCGTGGCCTA CGTGCCCGAT 
GGCAGCGTGG TCGGCGTGGG CACCGGCTCC ACCGTCAACT GCTTCATCGA CGCCCTGGCC 
GCCATCAAGG ACCGCATCGC CGGCGCGGTA TCGAGCTCGG TGCGCAGCAC CGAACGGCTG 
CAGGCGCTGG GCATCCCGGT GCTCGACCTC TCGCAGGTCG AGCGCATCCC GGTCTACATC 
GACGGCGCCG ACGAGATCGA CCCGCGCGGC CACATGATCA AGGGCGGCGG CGCCGCACTC 
ACGCGCGAGA AGATCGTCGC CGACCTGGCC GAGCGCTTCG TCTGCATCGC CGACGCCAGC 
AAGCGGGTCG ACGTGATGGG GCGCTTTCCG CTGCCGGTCG AGGTGATCCC GATGGCGGCG 
GCGCAGGTGG CACGGCGCTT CGGTGCGGCC TACGGCGGCC TGGCCCGGGT GCGCGAGGGC 
GTGGTCACCG ACAACGGCAA CCTGATCCTC GACGTCACCG GCCTGCACAT CGCCGACCCG 
CTGGCGATGG AGACCGAGGT CAACCAGTGG CCGGGCGTCG TCTGCGTGGG CATCTTCGCC 
CGCCACAAGG CCGCGGTCTG CCTGCTAGGC ACGCCTGAAG GCGTGCGCAC GCTCAACTTC 
TGA
 
Protein sequence
MTQDELKALV GQAAVAYVPD GSVVGVGTGS TVNCFIDALA AIKDRIAGAV SSSVRSTERL 
QALGIPVLDL SQVERIPVYI DGADEIDPRG HMIKGGGAAL TREKIVADLA ERFVCIADAS 
KRVDVMGRFP LPVEVIPMAA AQVARRFGAA YGGLARVREG VVTDNGNLIL DVTGLHIADP 
LAMETEVNQW PGVVCVGIFA RHKAAVCLLG TPEGVRTLNF