| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1050 |
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| Symbol | |
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| ID | 6163463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1118389 |
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| End bp | 1120500 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641663804 |
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| Product | excinuclease ABC subunit B |
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| Protein accession | YP_001790084 |
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| Protein GI | 171057735 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGAGC TTCAGGAGGC CGTGATCGAG CCGGCGGCAG CGACCGCGGG TCAGTTCGTC
AGTTACGAGG GTTCCCCCTT CCAGCTGTTC CAGCCCTATC CGCCGGCTGG CGACCAGCCC
ACGGCGATCG AGGGACTGGT TTCGGGCATC CAGGACGGCC TGACCTACCA GACGCTGCTG
GGCGTGACCG GCTCGGGCAA GACCTTCACG ATGGCCAACG TGATCGCCCG CATGGGCCGC
CCGGCGATCA TCTTTGCGCC CAACAAGACG CTGGCGGCAC AGCTGTACGC CGAGTTCCGC
GAGTTCTTTC CGAAGAACGC GGTCGAATAT TTCGTCAGCT ACTACGACTA CTACCAGCCC
GAGGCCTACA TGCCTCAGCG CGACCTGTTC ATCGAGAAGG ACAGCTCGAT CAACGAGCAC
ATCGAGCAGA TGCGGCTGTC GGCGACCAAG AGCGTGCTCG AGCGCCGCGA CACGATCATC
GTGGCCACCG TCAGCGCGAT CTACGGCATC GGCAAGCCCG AGGACTACAC GCAGATGCGT
TTCATCGTGC GCGTGGGCGA CACGATCGGC CAGCGCGACG TCATCGCGCA GCTGATCCGC
ATGCAGTACA CGCGCAACGA CACCGAGTTC GCGCGCGGCA CCTTCCGCGT GCGCGGCGAC
ACGATCGACA TCTTTCCGGC CGAACACTCC GAGCTGGCGA TCCGCCTGGA GCTGTTCGAC
GACGAGGTCG AGTCGCTGCA GCTGTTCGAC CCGCTGACCG GCCGCGTGCG CCAGAAGGTG
CCGCGCTTCA CGGTCTATCC GTCGAGCCAC TACGTGACGC CGCGCGAACG GGTGCTCGCC
GCCATCGAGG GCATCAAGCT CGAATTGCGC GAGCGTCTGG CCGAATTCGT CGCCGACGGC
AAGCTGGTCG AGGCGCAGCG GGTCGAGCAG CGCACGCGCT TCGATCTCGA GATGCTGCAG
GAGGTCGGCC ACTGCAAGGG CATCGAGAAC TACAGCCGTC ACCTCTCGGG CGCCGCGCCG
GGCGAGCCGC CGTCGACGCT GGTCGACTAC CTGCCGTCCG ATGCGCTGAT GTTTCTGGAC
GAAAGCCACG TGCTGATCGG CCAGCTCGGC GGCATGTACA ACGGCGACCG GGCGCGCAAG
ACCACGCTGG TGGCCTACGG TTTCCGCCTG CCCAGCGCGA TGGACAACCG GCCGCTGCGC
TTCGAAGAAT TCGAACGCAA GATGCGCCAG GTGGTGTTCG TGTCGGCCAC GCCGGCCGAC
TATGAAAAGC AGCATGCCGG CCAGGTGGTC GAACAGCTGG TGCGCCCCAC CGGGCTGGTC
GATCCGCTCA TCGAGGTACG GCCGGCCGGC TCCCAGGTCG ACGACGTGCT GCAGGAGATC
CGCCTGCGGG TGGCGATCAA CGAACGGGTG CTGATCACCA CGCTGACCAA GCGCATGGCC
GAGCAGCTGA CCGACTACAT GGCCGAAAAC GGCGTCAAGG TGCGTTACCT GCACTCGGAC
ATCGACACCG TCGAGCGGGT CGAGATCCTG CGCGACCTGC GGCTGGGCAC CTTCGACGTG
CTGGTGGGCA TCAACCTGCT GCGCGAGGGG CTGGACATTC CCGAGGTCTC GCTGGTGGCC
ATCCTCGATG CCGACAAGGA AGGGTTCCTG CGCGCCGAGC GCAGCCTGAT TCAGACCATC
GGCCGCGCGG CGCGCAACGT CAACGGCAAG GCCATCCTGT ATGCCGACAA GATGACCGAG
TCGATGCGCA AGGCGATCGG CGAAACCGAG CGCCGCCGCG CCCGCCAGGT CGAGCACAAC
ACCTTGCACG GCATCACGCC GCGCGGCATC CGCAAGCACG TCAAGGAGCT GATCGACGGC
GTCTACGGCG AGAAGTCGGG CAAGGACGAC CTGGCGATCA TGCATTCCGT GGCCGAAGTC
GAGGCGCTGT CCGAAAAGGA CCTCGGCAAA CGCATCAAGC AACTGGAGAA ACAGATGCTC
GAACATGCCC GCAACCTCGA GTTCGAGAAA GCCGCCCGCA TCCGCGATCA GCTGGCGCAA
TTGCGTGAGC AGGCCTTCGG TGCGGCCGGC AGCGACAACA TCGACGCGCT GGTGGCGAAG
GGCGGCTCAT GA
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| Protein sequence | MGELQEAVIE PAAATAGQFV SYEGSPFQLF QPYPPAGDQP TAIEGLVSGI QDGLTYQTLL
GVTGSGKTFT MANVIARMGR PAIIFAPNKT LAAQLYAEFR EFFPKNAVEY FVSYYDYYQP
EAYMPQRDLF IEKDSSINEH IEQMRLSATK SVLERRDTII VATVSAIYGI GKPEDYTQMR
FIVRVGDTIG QRDVIAQLIR MQYTRNDTEF ARGTFRVRGD TIDIFPAEHS ELAIRLELFD
DEVESLQLFD PLTGRVRQKV PRFTVYPSSH YVTPRERVLA AIEGIKLELR ERLAEFVADG
KLVEAQRVEQ RTRFDLEMLQ EVGHCKGIEN YSRHLSGAAP GEPPSTLVDY LPSDALMFLD
ESHVLIGQLG GMYNGDRARK TTLVAYGFRL PSAMDNRPLR FEEFERKMRQ VVFVSATPAD
YEKQHAGQVV EQLVRPTGLV DPLIEVRPAG SQVDDVLQEI RLRVAINERV LITTLTKRMA
EQLTDYMAEN GVKVRYLHSD IDTVERVEIL RDLRLGTFDV LVGINLLREG LDIPEVSLVA
ILDADKEGFL RAERSLIQTI GRAARNVNGK AILYADKMTE SMRKAIGETE RRRARQVEHN
TLHGITPRGI RKHVKELIDG VYGEKSGKDD LAIMHSVAEV EALSEKDLGK RIKQLEKQML
EHARNLEFEK AARIRDQLAQ LREQAFGAAG SDNIDALVAK GGS
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