Gene Lcho_1004 details

Gene Information

• Locus tag: Lcho_1004
• ID: 6160166
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 1072487
• End bp: 1073023
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 641663754
• Product: transcriptional activator FlhC
• Protein accession: YP_001790040
• Protein GI: 171057691

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGAGCCA AGAGCATCCT GACCGAAGCC AAGCAGATCG AGCGTGCCAT CACGCTGATC 
AAGCTCGGTG CACGCCTGCA GGTGCTGGAG TCGGAGACCG ACCTGTCCTA CGAGCGCCTG 
CTGCGCCTGT ACAAGGAAGT CGCCGGCAAG TCGCCGAGCA AGGGCCAGCT GCCCTTTTCG 
ACCGACTGGT TCATGACCTG GCAGCCCAAC ATCCACGCCA GCCTGTTCCT GAACACGCAC 
GAGTACCTGA ACAAGGTCGC CGAGATGGAG GAGATCGACA CCATCATCAA GGCCTACCAG 
CTCTACCTCG AGCAGACGCA ATCGCAGGGT CTCGAGCCCC TGTTGTCGGT GACCCGTGCC 
TGGCGGCTGG TCAAGTTCGT CGACAACGGC ATGCTCACGA TGACCGCCTG CTCCAAGTGC 
GGCGGCCACT TCGTGACCCA CCCGCACGAG ATCGCCAAGC ACTACGTGTG CGGCCTGTGC 
AACCCGCCGG CGCGGGCCGG CAAGGGCAAG GCCAGCGGCG GCCTGCAGCT TCACTGA 

 

Protein sequence

MRAKSILTEA KQIERAITLI KLGARLQVLE SETDLSYERL LRLYKEVAGK SPSKGQLPFS 
TDWFMTWQPN IHASLFLNTH EYLNKVAEME EIDTIIKAYQ LYLEQTQSQG LEPLLSVTRA 
WRLVKFVDNG MLTMTACSKC GGHFVTHPHE IAKHYVCGLC NPPARAGKGK ASGGLQLH