| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0963 |
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| Symbol | |
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| ID | 6161472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1028428 |
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| End bp | 1030527 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641663714 |
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| Product | bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase |
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| Protein accession | YP_001790000 |
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| Protein GI | 171057651 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase
[COG0283] Cytidylate kinase |
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| TIGRFAM ID | [TIGR00017] cytidylate kinase
[TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCCGA TTCCCTATCT CGACCTGCCG CCGCTCGGCG CGGCTGCCGG CACCGTGCGC
CTGCCCGGCT CCAAGAGCAT CTCCAACCGC CTGCTGCTGC TCGCCGGCCT GAGCGCGGGC
GTGACGACGC TGGTCGATCT GCTCGATTCC GACGACACCC GCGTCATGCT CGACGCCTTG
CGCGGCCTGG GCTGCCGCAT CGAGCAGCAG GGCCGCCACA CCCGCATCAC CGGCGTGGCC
GGCAAGCCGG CGGTGCTGGA GGCGGATTTC TTCCTCGGCA ACGCCGGCAC CGCGATGCGG
CCGCTGACTG CCGCGCTGGC CGTCATCAGC ACCCAGAACG GTGGCCGCTA CACGCTCAGC
GGCGTGCCGC GCATGCACGA GCGGCCGATC GGCGACCTGG TCGACGCCCT GCGCGCGCTG
GGCGTGGCGG TCGAGTGCCT GGGCAACGAG GGTTATCCGC CGCTGCGCCT GGCCGGCGGC
AGCCTGCTGC TCGACGCGCC GGTGCGTGTG CGCGGCGACG TCTCCAGCCA GTTCCTGACC
GCCCTGCTGC TGGCGCTGCC GCTGGCCGCG GGACCACGAG CCCCCACGCT CGGCACCGAC
GGGTCCTCGC TGCCCCCCGA GGGGGCGTCG CCGCCTTGGG GCGGCCCGGC GGCGGGCCGC
GACGTGGTGA TCGAGGTGAT CGGCGAGCTG ATCTCCAAGC CCTACATCGA GATCACGCTG
AACCTGCTGG CGCGCTTCGG CATCGCGGTG CGGCGCGAGG GCTGGCAGCG CTTCACGATT
CCCGCCGGCA GCGCCTACGT CACGCCCGGC GAGGTGCACG TCGAGGCCGA TGCCTCGTCG
GCCTCGTATT TCATCGCGCT CGGCGCGCTG GCCGGCGTGG ATGCGCCGGT GCGCATCGAG
GGCGTGGGCG CGGCATCGAT CCAGGGTGAC ATCCGCTTCG TCGAGGCCGC CCAGGCGATG
GGCGCGCGGG TGATGGCCGA GCCCAACGCG CTCGAGGTGC GCCGCGGCGC CTGGCCATTG
AAGGCCATCG AGCTCGACTG CAACCACATC CCCGACGCCG CGATGACGCT GGCCGTGATG
GCGCTCTACG CCGACGGCCC GAGCACGCTC ACCAACATCG CCAGCTGGCG CGTGAAGGAG
ACCGACCGCA TCGCCGCGAT GGCCACCGAG CTGCGCAAGC TCGGCGCGCA GGTGGAGGAG
GGGGCCGACC ACATCCGCGT CTGGCCGCTG GCGCAGTTCA AGCCCGCCGC CATCCACACC
TACGACGACC ACCGCATGGC GATGTGCCTG TCGCTGGCGG CGTTTCACAC GCTCAAGGGC
GCGGCGCCGG TGCCGGTGCG CATCCTCGAC CCGAAGTGCG TGGCCAAGAC CTACCCGGAC
TATTTCGAGA CCCTGTTCGG CGTGGTCGCG GCCGACGCCG CGCAGATCCC GGTCATCACG
ATCGACGGCC CGACCGCCTC TGGCAAGGGC ACGCTGGCCG CGGGCGTGGC GCAGGCGCTG
GGTTACCACA CGCTCGACTC GGGCTCGCTC TACCGCGTCA CCGCACTCGC CGCGCGGCGC
GCCCAGGTGG CGGCCGACGA CGAGGCCGGT CTGGCCGCGG TCGCGCGTGG CCTGCACCTG
CAGTTCGAGG GCACCAACGT GATCCTCGAC GGCGTCGACG TGACCGAGCG CCTGCGTGAC
GAGGCGGTCG GCGCGATGGC CTCGCAGATC TCGGTCTGGC CGCAGGTGCG CGCCGCGCTG
TTCGACCTGC AATGCGGCTT CCGCCAGCTG CCGGGCCTGG TGGCCGATGG TCGCGACATG
GGGACGGTGA TCTTTCCGCA GGCCGGGCTC AAGGTCTTCC TCACCGCGAC GCCTGCGGCG
CGCGCCGAGC GGCGGCATAA GCAATTGATT TCCAAGGGAA TTCCTGCTAG CCTCGACAGT
CTTCGCGCCG ACTTGGAAGC GCGTGATGCG CGCGACAAGA ATCGCAGCAC CGCGCCACTC
AAGCCAGCGC AAGACGCGCT TTTGCTCGAC AACTCCCTGC TCGGCATCGA GGCTTCGGTG
CAGCAGGTGA TTGCCTGGTG GAACGCGCGT TTGCCGTTTG ACGGCTCGGC TGGCTGCTGA
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| Protein sequence | MYPIPYLDLP PLGAAAGTVR LPGSKSISNR LLLLAGLSAG VTTLVDLLDS DDTRVMLDAL
RGLGCRIEQQ GRHTRITGVA GKPAVLEADF FLGNAGTAMR PLTAALAVIS TQNGGRYTLS
GVPRMHERPI GDLVDALRAL GVAVECLGNE GYPPLRLAGG SLLLDAPVRV RGDVSSQFLT
ALLLALPLAA GPRAPTLGTD GSSLPPEGAS PPWGGPAAGR DVVIEVIGEL ISKPYIEITL
NLLARFGIAV RREGWQRFTI PAGSAYVTPG EVHVEADASS ASYFIALGAL AGVDAPVRIE
GVGAASIQGD IRFVEAAQAM GARVMAEPNA LEVRRGAWPL KAIELDCNHI PDAAMTLAVM
ALYADGPSTL TNIASWRVKE TDRIAAMATE LRKLGAQVEE GADHIRVWPL AQFKPAAIHT
YDDHRMAMCL SLAAFHTLKG AAPVPVRILD PKCVAKTYPD YFETLFGVVA ADAAQIPVIT
IDGPTASGKG TLAAGVAQAL GYHTLDSGSL YRVTALAARR AQVAADDEAG LAAVARGLHL
QFEGTNVILD GVDVTERLRD EAVGAMASQI SVWPQVRAAL FDLQCGFRQL PGLVADGRDM
GTVIFPQAGL KVFLTATPAA RAERRHKQLI SKGIPASLDS LRADLEARDA RDKNRSTAPL
KPAQDALLLD NSLLGIEASV QQVIAWWNAR LPFDGSAGC
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