Gene Lcho_0959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0959 
Symbol 
ID6160504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1023035 
End bp1025692 
Gene Length2658 bp 
Protein Length885 aa 
Translation table11 
GC content66% 
IMG OID641663710 
ProductDNA gyrase subunit A 
Protein accessionYP_001789996 
Protein GI171057647 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones83 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAAT TCGCCAAAGA AACCCTGCCC ATCAGCCTCG AAGAGGAGAT GCGCCGTTCC 
TACCTCGATT ACGCAATGAG CGTGATCGTC GGACGTGCCC TGCCTGATGC GCGTGACGGA
CTGAAGCCGG TGCATCGCCG CGTGCTGTTC GCGATGCACG AGTTGAGCAA CGACTGGAAC
CGGCCTTACA AGAAGTCGGC CCGCATCGTC GGCGACGTGA TCGGTAAGTA CCACCCGCAC
GGCGATACCG CGGTCTACGA CACCATCGTG CGCATGGCGC AGGATTTTTC GCTGCGGCAC
ATGCTGGTCG ACGGCCAGGG CAACTTCGGC TCGGTCGACG GCGACAACGC CGCGGCGATG
CGCTACACCG AAATCCGCCT GGCCAAGATC GCCCACGAGA TGCTGGCCGA TCTGGACAAG
GAAACCGTCG ACTTCGGTCC CAACTACGAC GGTTCCGAAA AGGAGCCGCT GGTGCTGCCC
AGCCGCCTGC CCAACCTGCT GGTGAACGGC TCGACCGGCA TCGCGGTGGG CATGGCCACC
AACATCCCGC CGCACAACCT CAACGAAGTC GTCGATGCCT GCCTGCATCT GATGAAGAAC
CCCGAGGCGT CGATCGAGGA GCTGATGGAG ATCATCCCGG CGCCCGACTT CCCGACCGCC
GGCATCATCT ACGGCATCAA CGGCGTGCGC GAGGGCTACC GCACCGGCCG CGGCAAGGTG
GTGATGCGCG CCAAGGTGCA CTTCGAGGAC ATCGACCGCG GCCAGCGCCA GTCGATCATC
GTCGACGAGC TGCCCTACCA GGTCAACAAG AAGACGCTCC AGGAGCGCAT GGCCGAGCTG
GTGCACGAGA AGAAGATCGA AGGCATCAGC CACATCCAGG ACGAGTCCGA CAAGTCGGGC
ATGCGGCTGG TGATCGAGCT CAAGCGCGGC GAGGTGCCCG AGGTCGTGCT CAACAACCTC
TACAAGCAGA CCCAGCTGCA GGACACCTTC GGCATCAACA TGGTGGCGCT GATCGACGGT
CAGCCCAAGC TGTGCAACCT CAAGCAGCTG CTCGAGATCT TCCTCGAGCA CCGCCGCGAG
GTCGTCACCC GCCGCACCGT GTTCGAGCTG CGCAAGGCGC GCGACCGCGG CCACGTGCTC
GAAGGCCTGG CGGTGGCGCT GGCCAACATC GACGAGTTCA TCGAGACCAT CAAGAACTCG
CCCACGCCGC CGGTGGCCAA GCTGGCGCTG ATGAGCAAGA GCTGGGATTC GTCGGTGGTG
CGCGAGATGC TCACCCGCGC CGAGGGCGAC ACGCCGGGCG GGCGCGCCGC CTTCCGCCCC
GAGGGCCTGG CGCCGCAGTT CGGCATGCAG GCCGACGGGC TGTACCGCCT GTCCGACGAC
CAGGCCGGCG AGATCCTGCA GATGCGCCTG CAGCGCCTGA CCGGGCTGGA GCAGGACAAG
ATCGTCGGCG AGTACAAGGA CGTGATGGCG CAGATCGCCG ACCTGCTCGA CATCCTGGCC
AAGCCGGCGC GGGTCACGGT CATCATCGGC GACGAACTGA CGGCCGTGCG CCAGGAGTTC
GGCCAGAGCA AGATCGGCGT GCGCCGCTCG GTGGTCGAGC ACAACGTGCA GGAGCTCGGC
ACCGAGGACC TGATCACGCC GACCGACATG GTGGTCACGT TGAGCCACAC CGGCTACATC
AAGAGCCAGC CGCTGGCCGA ATACCGCGCG CAGAAGCGCG GCGGGCGCGG CAAGCAGGCC
ACCGCGACCA AGGACGACGA CTGGGTCGAC GAGCTCTTCA TCGCCAACAC CCACGACTGG
ATGCTGTGCT TCAGCAATCG CGGCCGGGTC TACTGGCTGA AGGTCTGGGA GGTGCCGCAA
GGCGGGCGCA ACTCGCGCGG CAAGCCGATC GTCAACATGT TCCCGCTGCA GCCCGACGAG
AAGATCAACG TCGTGCTGCC GCTGACCGGC GCCAACCGCA GCTTCCCGGC CGATCACTAC
ATCTTCATGT GCACCGCGCG CGGCACGGTC AAGAAGACCG CGCTCGACGA CTTCAGCAAC
CCGCGCAAGG CCGGCATCAT CGCGGTCGAC CTCGACGAAG GCGACTTCCT GATCGGCGCG
GCGCTGACCG ACGGCCAGCA TGACGTGATG CTGTTCTCCG ACGGCGGCAA GGCGGTGCGT
TTCGATGAAG AAGACGTGCG CCCGCTGGGC CGCCAGGCGC GTGGCGTGCG CGGCATGGCG
CTCGACGAAG GCCAGAGCGT GATCGCGATG CTGGTGGCCG AGGACGAGAC GCAGAGCGTG
CTGACCGCCA CCGAAAACGG CTACGGCAAG CGCACCAGCA TCCTCGAGTA CACGCGCCAC
GGCCGCGGTA CCAAGGGGAT GATCGCGATC CAGCAGACCG AGCGCAACGG CAAGGTGGTG
GCGGCAACGT TGGTGCGGCC CAACGACGAG ATCATGCTGA TCACCGATCG CGGTGTGCTG
GTCCGCACAC GCGTTGCTGA AATTCGCGAA TTGGGACGCG CCACCCAGGG CGTGACGCTG
ATCGCGCTCG ATGAAGGTGC CAAGCTGTCG GGTTTGCAGC GCATCGTCGA AAACGATGCC
AACGAGTCGA TCGCCGATCC CGGCGTCGAC GCCAACCCCG AAGCCGATGC CGGAGTCCCC
GGCGAGGAGA GCACCTGA
 
Protein sequence
MTQFAKETLP ISLEEEMRRS YLDYAMSVIV GRALPDARDG LKPVHRRVLF AMHELSNDWN 
RPYKKSARIV GDVIGKYHPH GDTAVYDTIV RMAQDFSLRH MLVDGQGNFG SVDGDNAAAM
RYTEIRLAKI AHEMLADLDK ETVDFGPNYD GSEKEPLVLP SRLPNLLVNG STGIAVGMAT
NIPPHNLNEV VDACLHLMKN PEASIEELME IIPAPDFPTA GIIYGINGVR EGYRTGRGKV
VMRAKVHFED IDRGQRQSII VDELPYQVNK KTLQERMAEL VHEKKIEGIS HIQDESDKSG
MRLVIELKRG EVPEVVLNNL YKQTQLQDTF GINMVALIDG QPKLCNLKQL LEIFLEHRRE
VVTRRTVFEL RKARDRGHVL EGLAVALANI DEFIETIKNS PTPPVAKLAL MSKSWDSSVV
REMLTRAEGD TPGGRAAFRP EGLAPQFGMQ ADGLYRLSDD QAGEILQMRL QRLTGLEQDK
IVGEYKDVMA QIADLLDILA KPARVTVIIG DELTAVRQEF GQSKIGVRRS VVEHNVQELG
TEDLITPTDM VVTLSHTGYI KSQPLAEYRA QKRGGRGKQA TATKDDDWVD ELFIANTHDW
MLCFSNRGRV YWLKVWEVPQ GGRNSRGKPI VNMFPLQPDE KINVVLPLTG ANRSFPADHY
IFMCTARGTV KKTALDDFSN PRKAGIIAVD LDEGDFLIGA ALTDGQHDVM LFSDGGKAVR
FDEEDVRPLG RQARGVRGMA LDEGQSVIAM LVAEDETQSV LTATENGYGK RTSILEYTRH
GRGTKGMIAI QQTERNGKVV AATLVRPNDE IMLITDRGVL VRTRVAEIRE LGRATQGVTL
IALDEGAKLS GLQRIVENDA NESIADPGVD ANPEADAGVP GEEST