Gene Lcho_0930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0930 
Symbol 
ID6159775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp994108 
End bp994704 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content66% 
IMG OID641663680 
Productubiquinol-cytochrome c reductase, iron-sulfur subunit 
Protein accessionYP_001789967 
Protein GI171057618 
COG category[C] Energy production and conversion 
COG ID[COG0723] Rieske Fe-S protein 
TIGRFAM ID[TIGR01416] ubiquinol-cytochrome c reductase, iron-sulfur subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones119 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACC AGCAAGTCGA CCAAGCCAAA CGGACGTGGC TGATTGCGTC GAGCTGCGCA 
GGCGCCATCG GTGGCGTTGC AGCCGCGGTG CCTTTCGTCA GTACCTTCGC GCCCTCCGAG 
CGCGCCAAGG CAGCCGGTGC GGCGGTCGAA GTCGACATCA GCGCCATCAA GCCGGGCGAA 
AAGCTCACCG CCGAATGGCG CGGCAAGCCC GTCTGGATCG TGCGTCGCAC GCCCGAGCAG 
CTGGCCGCCC TCAAGGGTCT CGACAGCCAG ATGGCCGACC CCGGCAACGC GCGCACGGCC 
TATCCCGTGC CCGAGTACGC CAAGAACGAA CACCGTTCGA TCAAGCCCGA GTTCCTCGTC 
GTCGTGGGCA TCTGCTCGCA CCTCGGTTGC TCGCCGTCGG ACAAGTTCCA GGCCGGCCCG 
CAGCCCTCGC TGCCCGACGA CTGGCAAGGC GGGTTCCTGT GCCCCTGCCA TGGCTCGACC 
TTCGACCTCG CCGGGCGTGT CTACAAGAAC AAGCCTGCGC CGGACAACCT CGAGGTGCCG 
CCGCACATGT ATCTGTCGGA CACCAAGTTG CTCATTGGCG AAGACAAGAA GGCTTGA
 
Protein sequence
MSDQQVDQAK RTWLIASSCA GAIGGVAAAV PFVSTFAPSE RAKAAGAAVE VDISAIKPGE 
KLTAEWRGKP VWIVRRTPEQ LAALKGLDSQ MADPGNARTA YPVPEYAKNE HRSIKPEFLV 
VVGICSHLGC SPSDKFQAGP QPSLPDDWQG GFLCPCHGST FDLAGRVYKN KPAPDNLEVP 
PHMYLSDTKL LIGEDKKA