Gene Lcho_0929 details

Gene Information

• Locus tag: Lcho_0929
• Symbol: mscL
• ID: 6160051
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 993457
• End bp: 993879
• Gene Length: 423 bp
• Protein Length: 140 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641663679
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_001789966
• Protein GI: 171057617
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 118
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGTGT TGAGCGAATT CAAGGCGTTT GCCGTCAAGG GCAACGTGGT CGACCTGGCC 
GTCGGCGTGA TCATCGGTGG CGCGTTCGGC AAGATCGTCG AATCGCTGGT CGGCGACGTC 
ATCATGCCGA TCGTCAGCAA GATCTTCGGC GGGCTGGACT TCAGCAACTA CTTCATCCCG 
CTGGCCGGCC AGACCGCCAC CACGCTGGTC GAGGCCAAGA AGGCTGGCGC GGTGCTGGCC 
TACGGCAGCT TCATCACCGT GGCGATCAAT TTCATGATCC TGGCGTTCAT CATCTTCATG 
ATGATCAAGC AGATCAACCG ACTGCAGAGC GCCCCGGCAC CGGCGCCCGC ACCGGCCGAG 
CCGCCCCCGC CGGCCGAAGA CATCGTGCTG CTGCGCGAGA TCCGGGACTC GCTCAAGCGC 
TGA 

 

Protein sequence

MSVLSEFKAF AVKGNVVDLA VGVIIGGAFG KIVESLVGDV IMPIVSKIFG GLDFSNYFIP 
LAGQTATTLV EAKKAGAVLA YGSFITVAIN FMILAFIIFM MIKQINRLQS APAPAPAPAE 
PPPPAEDIVL LREIRDSLKR