Gene Lcho_0915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0915 
Symbol 
ID6160247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp978789 
End bp981257 
Gene Length2469 bp 
Protein Length822 aa 
Translation table11 
GC content72% 
IMG OID641663665 
ProductHpt sensor hybrid histidine kinase 
Protein accessionYP_001789952 
Protein GI171057603 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGCCTG CGGTCGTGGA CAGCCCGTCG GCCGATCTGC CGCTGTCGTC GACGCCATCC 
GGGGTCGGGC GCACGGCCGG CCTGGGCCGC TGGCTGTCGC TGCTGGCGCT GGTGCTGCTC
GGCGTCTTCG CGGGCGTCGG CTGGGTGCAG TGGCAGTCGA TCTCGCTGCT CAACGCGACC
GTGCAATACC AGGGCGACAA CCTGGTCTGG AGCTTCTACC AGCTCGAAAG CGAATACGAG
AAGGTGCGCC TGGCCGCGCG CGAGCTCGAC CACGAGACCA CCCCCGAGGC GGTGGCCGCG
CTGCAGGCCC GCTACGAGGT GTTCGTCAGC CGCATCAGCC TGGTCGAGCC CGAGCGCACC
GAGTCGCTGT CGGTGCTGCT GCCGGCCCAG CGCGACGTGA TCGCCCGTGT GCACGCCTTC
GTCGAACGCA CCGACCAGCT CATCGGCCCG GACGCGACGC CGCCGATGGA CCCCGGCTTC
TGGCGCCAGT TCGCCGACGG CATGGCGCCG CTGTCGGTCG AGATCCACGA GCTGGCCCTG
CAGGCCAACC GCGACATCGC CGACCAGGTG GCGCTGCGCA ACGAGGCGGT GCGGCGGCAG
AACGGCATCG CGATCGGGCT GACGATCTTC CAGTCGCTGC TGACGCTGCT GTTCGCGGTG
GTGGTGGTGC GCCAGGTGCG GGCCCTGCAG CAGCGCCGCA CCCACCTCGA GGCGCTGGCC
GCCAACCTGC AGGAGGCGCG CATCGAGGCC GAGCAGGCCA GCCGCGCCAA GAGCGCCTTC
CTGGCCAACA TGAGCCACGA GCTGCGCACG CCGTTCAACG GCCTGCTGGG CATGCTGTCG
CTGCTGCAGC GCTCGCCGCT CGATGCCCGC CAGGCCGACT ACCTGCAGAC CGCGCGCGAA
TCCGGCGAGC ACCTGCTGGC CATCCTCAAC GACGTGCTCG ACATCTCCAA GCTCGAGTCG
GGCCGGCTCG AGATCACGCC CGAGCGGACC TCGCTGATCC GCGTGCTCGG CGACGTGCGC
TCGGTGATGA GCCCGCAGGC GCAGGCCAAG CACCTGCGCT GGAGCGTCAC GGTGGCCGAC
GACGTGCCGG TGTGGATCCG TGCCGATGCC AAGCGGCTCA AGCAGGTGCT GTTCAACCTG
GTCGGCAACG CCTTGAAGTT CACCGAGAAC GGCGAGGTCA GCGTGCACGT CGATTGCGTG
CCGGCACCGG CCACGGCGAG CGCGGCGCCC GGCGCGGCCG AGGCCGTGCC GGCCGCGACC
GCATGGCTGC GCTTCGCGGT CACCGACACC GGCATCGGCA TGGATGCGCT GACGCTGGCG
CGGCTGTTCC AGCGTTTCAG CCAGGGCGAC GAAACCATCA ACCGCCGCTT CGGCGGCACC
GGCCTGGGTC TGGAGATCTC GCGCACGCTG GCGCGCCGCA TGGGCGGCGA CATCACCGTG
CGCAGCGAAG CCGGCCGTGG CAGCGTCTTC ACCGTGCTGC TGCCGTTCGA GCGCATCGAT
GCGCCGCCGG CCGAGGACAC CGCCCCGGTC GTGCGGCCGG TGCCGGGCGG CGTCACCCCG
GCGGCCGACG GCCAGTCGGC CGACCCCGCC GGTGGCGCGC CGCTGCGGGT GCTCGTGACC
GACGACCACC CCGTCAACCG CAAGTTCATG CAGGCGCTGC TGCAGCAGCT CGGCCATCAG
GTGCACCTGC GCGAGAACGG TGCCGAGGCG CTCGAAGCGC TGCATGAGCA CACCTTCGAC
CTGATCCTGA TGGACGTGCA CATGCCCGTG ATGGACGGGC TGGCCGCCAC CCGCGCCATC
CGTGCGCTCG ACGGCGCGGC CGCGCAGGTC AAGATCGTGG CGCTCACCGC CGATGCCTTC
AGCGAATCGC GCCAGCGTGT CATCGACGCC GGCATGGACG ATTTCCTGGC CAAGCCGGTG
CAGATGCAGG ACGTCGAGGA GATGCTGCGC CGCAACTTCG GCGCGCGTGC GGTCTTCGAG
CCGGCGGTGC CGCCGGCCGA CTGGGCGCCA CCGCCCGAGC CCGCCGTGGT CGTCGCGCCG
TCGCAGCCCG CTGTCGCGAC CCTGGCGCCC GAGGTGTCCG CGCCACCCGC ACCGCGGCGC
CGCTTCAAGC GTGGCGACGC CTCGCGCGTG CTCGATCTCG AGGCCATCGG CGAAGTCTGC
CTGGCGGTCT CGATGGTGGG CTACGGCTCG CTGCTGAGCG GCTTCCTGGC CGACGAGTCG
CGCACCATCG CCGAGCTGAT CGAGGTGCTC GAAAGCCATG ACGTCGCCCG GTTCAAGGCG
GCCGCCCACA AGCTCAAGGG TGCCGCGGCC AACCTGGGCC TGCGCCTGCT GTCGGCCACC
GCGCGAGAGA TCGAGCAGGC CGAGGCCGAA CCGGACGAAG CCCGCAGCCG CGACTACGCG
CTGCGCCTGG CCGAGGAGCT GGACCTGACC CGCGCGCTGT GCACGCGGCT AGGCCTGTTA
GCCGGCTGA
 
Protein sequence
MKPAVVDSPS ADLPLSSTPS GVGRTAGLGR WLSLLALVLL GVFAGVGWVQ WQSISLLNAT 
VQYQGDNLVW SFYQLESEYE KVRLAARELD HETTPEAVAA LQARYEVFVS RISLVEPERT
ESLSVLLPAQ RDVIARVHAF VERTDQLIGP DATPPMDPGF WRQFADGMAP LSVEIHELAL
QANRDIADQV ALRNEAVRRQ NGIAIGLTIF QSLLTLLFAV VVVRQVRALQ QRRTHLEALA
ANLQEARIEA EQASRAKSAF LANMSHELRT PFNGLLGMLS LLQRSPLDAR QADYLQTARE
SGEHLLAILN DVLDISKLES GRLEITPERT SLIRVLGDVR SVMSPQAQAK HLRWSVTVAD
DVPVWIRADA KRLKQVLFNL VGNALKFTEN GEVSVHVDCV PAPATASAAP GAAEAVPAAT
AWLRFAVTDT GIGMDALTLA RLFQRFSQGD ETINRRFGGT GLGLEISRTL ARRMGGDITV
RSEAGRGSVF TVLLPFERID APPAEDTAPV VRPVPGGVTP AADGQSADPA GGAPLRVLVT
DDHPVNRKFM QALLQQLGHQ VHLRENGAEA LEALHEHTFD LILMDVHMPV MDGLAATRAI
RALDGAAAQV KIVALTADAF SESRQRVIDA GMDDFLAKPV QMQDVEEMLR RNFGARAVFE
PAVPPADWAP PPEPAVVVAP SQPAVATLAP EVSAPPAPRR RFKRGDASRV LDLEAIGEVC
LAVSMVGYGS LLSGFLADES RTIAELIEVL ESHDVARFKA AAHKLKGAAA NLGLRLLSAT
AREIEQAEAE PDEARSRDYA LRLAEELDLT RALCTRLGLL AG