| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0862 |
|---|
| Symbol | |
|---|
| ID | 6160365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 925925 |
|---|
| End bp | 927958 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641663612 |
|---|
| Product | TRAG family protein |
|---|
| Protein accession | YP_001789899 |
|---|
| Protein GI | 171057550 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.777114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG TCCACGCCTG GATTCCTGCT GGTCATTGGC CTGCCTGGCT GACCCCGCGC
CGAGCGGCAG GGATCGGGTT CGGACTGGCC GCATTCGTGG TGCTGTCGGT CGCGGCGATC
TACCTCTCGG CCGCCCTGTT CCTGCTGCTG AACAAGGTCG ATCCACGCCG GGTCGAGTTG
ACCAGCCTGT GGACCTACTG GGCGGTCTAC AGCCCGGACC CGGCGCAGCG CAAGCGCTTG
TTGGCCTCGA TGACGGCCTC GGGCATCGGC CTGCTGTTGG TGCTGCCCGG TGCGCTGCTG
GTGGCGGCGC AACCACGCCG TCGGCTGCAC GGCGATGCCC GCTTCGCGAC CACGGCCGAG
ATCACGCGTG CCGGCCTGCT GGGGGGTTCG ACCGATGGCC GGCCCGGCAT CCTGATCGGC
CGGCACCGGG GGCAGTTCAT CAGCCTGAGC GGCCAGCTCT CGGTGATGCT GTCGGCCCCG
ACCCGCAGCG GCAAGGGCGT CGGGGTGGTG ATCCCCAACC TGCTGAACTG GCCCGACTCG
GTGGTGGTGC TGGACATCAA GGGCGAGAAC CACGCGGTCA CGGCGGGCTT CCGGGCGAAG
AGCGGCCAGC GGGTCTATGC CTTCGCGCCC TTCGACGACC AGGCCCGCAG CCACCGCTGG
AATCCGCTGA CGGCGGTGCG CACGAGCCCG ATGCACCGGG TCGGCGACCT GCTCGCGATC
GGCCAGGTGT TCTATCCCAA CGACGGCAGC GGCACCTCGT CGGAAGCCTT CTTCAACGAC
CAGGCGCGCA ACCTCTTCCT CGGGCTGGGC CTGCTGTTGC TGGAGACCCC TGCCTTGCCT
CGCACGATCG GAGAGCTGCT GCGGCAGTCC TCGGGCAAGG GCCGTGCACT ACGCGACCAC
CTGGCCGACC AGATCCGGGG CCGGCGGATC GACAGCAAGG AACTGGGCCC CGCCCTGTCC
GACGAGTGCA TCGACGCGCT GCAGCGCCTG CTGTCGAACT CGGAGAACAC GCTGTCCAGC
ATCGTCGCGA CCTTCAACGC ACCGCTGACG ATCTTCGCGG ACGCGGTGGT CGATGCGACG
ACCAGCGCCG ACGACTTCCG GTTCGAGGAC GTGCGGCGCC AGCGCCTGTC GATCTACGTG
CACATCCCGC CGAACCGGCT GACGAGCGCG CGCCCGCTGC TCAACCTGTT CTTCTCGCAG
CTGGTCAGCC TCAACACCCA GCAGCTACCC GAGCACGACC CCAGCCTGAC GGTGCAGTGC
CTGCTGGTCA ACGACGAGTT CACGACCATG GGCCGGGTCG GAGTGATCAC GATGTCGGCG
GCCTTCCTCG CGGGCTACAA CCTGAGGCTG CTGACGGTGG TGCAGGCGAT GTCGCAGCTG
GACGCGGTCT ACGGCGACAA GGAGGCCCGC ACCTTCGCGA CCAATCACGG GCTGCAGATC
CTGTTCGCGC CACGCGAGCA GCGTGACGCC GACGAGTACA GCGCGATGCT GGGGCACTTC
ACCGAGCGGG GCACCTCGCG TGGGCACAGC CGGTCGTTGG GGCCGAATGG CAGTCGATCG
GTCAGCGTCA ACGAGAGCGA GCAGCGCCGT GCGCTGTTGC TGCCTCAGGA GTTCAAGGAA
CTCGGCAGCG AGCGCCTGGT AGTGATCGCC GAGAACTGCA AGCCCGTCCT GGGCGAGAAG
ATCCGCTACC ACCGCGACCC GGCGTTCACC AGCCGGCTGC TGCCGCCGCC CGAGGTGCCG
GCGCTGGACA TGGACCTGCA CCTGGCGCGT GTGCAGCAAC GCTGGCGCTT GGTCGAGGGG
GACCTGGCGC CGGACGAGAC GGTGTCCATC GAGCGGTTGG CCCACGACAT CAACCAGTTG
CCGGACCACT TCACGGAGCT GTCGGCACAG CAGATGGCCG ACGCCTGCCT GGACTTCTTC
TCGGAAAAAG AAGCTCAGCC CAGCGGCGGC ACCGTCGAAG CCGCGGCCGA CGAGGAAGGC
GTCCTGATCT CGAACGACGT CGCCCGAGAA GCGGCCCCTA CACCCGATGC CTGA
|
|---|
| Protein sequence | MSNVHAWIPA GHWPAWLTPR RAAGIGFGLA AFVVLSVAAI YLSAALFLLL NKVDPRRVEL
TSLWTYWAVY SPDPAQRKRL LASMTASGIG LLLVLPGALL VAAQPRRRLH GDARFATTAE
ITRAGLLGGS TDGRPGILIG RHRGQFISLS GQLSVMLSAP TRSGKGVGVV IPNLLNWPDS
VVVLDIKGEN HAVTAGFRAK SGQRVYAFAP FDDQARSHRW NPLTAVRTSP MHRVGDLLAI
GQVFYPNDGS GTSSEAFFND QARNLFLGLG LLLLETPALP RTIGELLRQS SGKGRALRDH
LADQIRGRRI DSKELGPALS DECIDALQRL LSNSENTLSS IVATFNAPLT IFADAVVDAT
TSADDFRFED VRRQRLSIYV HIPPNRLTSA RPLLNLFFSQ LVSLNTQQLP EHDPSLTVQC
LLVNDEFTTM GRVGVITMSA AFLAGYNLRL LTVVQAMSQL DAVYGDKEAR TFATNHGLQI
LFAPREQRDA DEYSAMLGHF TERGTSRGHS RSLGPNGSRS VSVNESEQRR ALLLPQEFKE
LGSERLVVIA ENCKPVLGEK IRYHRDPAFT SRLLPPPEVP ALDMDLHLAR VQQRWRLVEG
DLAPDETVSI ERLAHDINQL PDHFTELSAQ QMADACLDFF SEKEAQPSGG TVEAAADEEG
VLISNDVARE AAPTPDA
|
|---|
| |