Gene Lcho_0844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0844 
Symbol 
ID6161639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp904419 
End bp905621 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content70% 
IMG OID641663594 
Productbeta-ketoadipyl CoA thiolase 
Protein accessionYP_001789881 
Protein GI171057532 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCACG CCTACATCTG CGACGCCATC CGCACCCCCT TCGGCCGCTA CGGCGGCGCG 
CTGTCGTCGG TGCGCGCCGA CGACCTCGGC GCGATCCCGA TCGCCGCGCT GATGGCGCGC
AACCCCGGCG TCGACTGGGC CCAGATCACC GACGTGCTCT ACGGCTGCGC GAATCAGGCC
GGCGAGGACA ACCGCAACGT CGCGCGCATG TCCGCGCTGC TGGCCGGCCT GCCGCTGGAC
GTGCCGGGTT CGACCATCAA TCGCCTGTGC GGCTCGGGCA TGGACGCGAT CGGCTCGGCC
GCACGCGCCA TCAAGGCCGG CGAGGCGGGG CTGATGATCG CCGGCGGCGT CGAGAGCATG
AGCCGCGCGC CGTTCGTGAT GCCCAAGGCC GAATCGGCCT TCAGCCGCAG CAACGCGGTC
TACGACACCA CCATCGGCTG GCGCTTCGTC AACAAGCTGA TGAAGGCGCA ATACGGCGTC
GACTCGATGC CCGAGACGGC CGAGAACGTG GCGACCGATT TCGGCATCGA CCGCGCCTCG
CAGGACCGCA TGGCGCTGGC CTCGCAGTTG AAAGCGGTGG CGGCGCAGAA GTCCGGGTTC
TTCGACGCCG AGATCTGCCC GGTGACGATT CCGCAGAAGA AGGGCGATCC GATCGTCGTC
TCCAAGGACG AACACCCACG CGAGACCAGC CTCGAATCGC TCGCCAAGCT CAAGGGCGTC
GTGCGCCCCG ACGGCAGCGT GACAGCCGGC AACGCCAGCG GCGTCAACGA CGGCGCCTGC
GCGCTGCTGC TGGCCAGCGA CACCGCCGCG GCGTTGAACG GCCTGACGCC ACGCGCCCGC
GTGGTCGGCA TGGCCACCGC CGGCGTAGCC CCGCGCATCA TGGGTTTCGG CCCGGCACCG
GCCACCCGCA AGGTGCTGGC GCTGACCGGC CTGCGGCTCG ACCAGATGGA CGTCATCGAG
TTGAACGAAG CCTTCGCCGC GCAAGGCCTG GCGGTGCTGC GTGACCTCGG CCTGGCCGAC
GACGATGCAC GCGTCAATCC GAACGGCGGC GCGATCGCGC TCGGCCATCC GCTGGGCGCC
AGCGGCGCGC GGCTGGTGAC CACGGCGATC AACCAGCTGC ACCGCATCGG CGGGCGCTAC
GCGCTGTGCA CGATGTGCAT CGGCGTCGGC CAAGGCATCG CGCTGATCGT CGAGCGCGTC
TGA
 
Protein sequence
MTHAYICDAI RTPFGRYGGA LSSVRADDLG AIPIAALMAR NPGVDWAQIT DVLYGCANQA 
GEDNRNVARM SALLAGLPLD VPGSTINRLC GSGMDAIGSA ARAIKAGEAG LMIAGGVESM
SRAPFVMPKA ESAFSRSNAV YDTTIGWRFV NKLMKAQYGV DSMPETAENV ATDFGIDRAS
QDRMALASQL KAVAAQKSGF FDAEICPVTI PQKKGDPIVV SKDEHPRETS LESLAKLKGV
VRPDGSVTAG NASGVNDGAC ALLLASDTAA ALNGLTPRAR VVGMATAGVA PRIMGFGPAP
ATRKVLALTG LRLDQMDVIE LNEAFAAQGL AVLRDLGLAD DDARVNPNGG AIALGHPLGA
SGARLVTTAI NQLHRIGGRY ALCTMCIGVG QGIALIVERV