Gene Lcho_0822 details

Gene Information

• Locus tag: Lcho_0822
• ID: 6163383
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 885208
• End bp: 887094
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641663572
• Product: TRAP C4-dicarboxylate transport system permease DctM subunit
• Protein accession: YP_001789859
• Protein GI: 171057510
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 103
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGCACG CCCTCTCCAG TACCCCGGTC GATCCCGACG AGACCGCGGC CCCGCCGCCT 
GGCGTGGCGG CGTTCAACCG TGCGCTTGCC CGCTGGATCG CGCCGATCGA ACTTGTCACT 
GCGCTGCTGA TGGCGGCCAT CGTCGCGATG CTGTTTGGCG GCGTGGTGGC CCGCTACGCA 
TTCGGGCGAC CGATCACCTG GATCGACGAG ATCGTCTCGT TCGCGTTCAT CTGGGTGGCG 
ATGCTGGGCG CCGTGCTGGC CATGCATCGC AACGAGCACC TTCGCCTGTC GATGTTCGTG 
GACCGGATGT CACCTCGGCT GAGGGAGTAT GTACACGCCT TCGCCCTGGT CGCGATGGCC 
ACGTTCCTGA TGGGACTGAT CGGACCGGCC ATCGAGCATG TGGAGGTCGA GTGGATCGTG 
GAAACGCCGG CACTCGGCAT TCCGGGTGGC TTGCGTGTGG CGGCGATTGC CGTCGGACTC 
GTGCTGATGC TGGCCGTCGT CGCCATCTAC TCGGTCCGCA CGGTCCCCAA GGCAGCGCTC 
GCGACGGCCA TCCTGGGGGT CGGTGCCTTC GTCGGCCTGT GCCTTTGGTT GTCGCCGCAG 
TTCATGCAAC TGGGCCTGTT CAACATCGTC ATTTTCCTGA CCGGCGTGGT CGCGCTGTGC 
CTGTTCGCCG GGGTACCCAT CGCCTTCTGC TTCGGCTGCG GCGTGATGAG CTTCCTCGCT 
TTCTCCAGCA ACGTGCCGCT GATCGTCATC GTCGGGCGCA TCGACGAGGG CATGGCCAAC 
ATGGTGCTCG TCTCGGTGCC GATCTTCGTG CTGCTGGGCT GCGTGCTCGA TGCCACCGGC 
ATGGGCAAGG CAATCGTCGA TCTGCTGGCG TCGCTGATCG GACACGTCAA GGCCGGCATG 
TCCTACGTGC TGCTGGGTTC GCTGTTCATC GTCTCGGGCA TCTCGGGTTC CAAGGTCTCC 
GACATGGCGA CCGTCGCTCC GGCGCTGTTC CCGGAGATGC GCCGGCGCGG CAACAAGCAA 
CCCGAGATGG TGGCGCTGCT CGCCACAGGT GCGGCGATGG CCGACACCGT GCCGCCGAGC 
ATCGTGCTGA TCGTGCTCGG CTCGGTCGCT GGCGTGTCGA TCGCCGGCCT GTTCGAGAGC 
GGCTTCGTCG TCGCGATGGT GCTGCTGCTG TCGCTGCTCC TGCTGGCGCG CTGGAAGGCC 
CGTCACGAAG ACACCAGCAG CGTGCGCCGC CCGCCGCTGA AGGCGATCGG CAAACTGGCG 
CTGGTGGCCG CTCCCGCGCT GGTCTTGCCC TTCCTGATCC GCAGTGCAGT GGGCGGGGGC 
ATCGCGACCG CTACCGAGGT GTCGACGATC GCGGTCCTCT ACGCGATGCT GATCGGCCAG 
GTGCTCTACG GCGGGCTGGG CTGGAAGCGC GTCTATTCGA TGCTGGTCGA GACGGCCGCG 
CTCAGTGGCG CGATTCTCCT GATCCTCGGC ACGGCGTCCG CCATGGCCTG GGCCATCACC 
CAGAGCGGCT TGGTCCAGCA GATGTCGCAG GTGCTCACCA CCTTGCCCGG CGGCTGGATC 
GCCTTCATGG GCGTCACGGT CCTGGTCTTC CTGGTGCTCG GTTGCCTGCT CGAAGGCCTG 
CCCGCCGTGC TGCTGCTCGC GCCGATCATG TTCCCGATCG CCAAGAAGCT CGGCATCCAC 
GAGATCCACT ACTCCATGGT GATCGTCTGC GCCATGAACG TGGGTTTGAT GATGCCGCCG 
ATCGGCGTCG GCTTCTATGT CGCCTGCCGC ATCGGCGACG CCAAGCCCGA CGACGCCATG 
GTCGCGATCT GGCCCTACAT CGCAGCGCTG CTGGGTGGTG TGATCGTGAT CGCGATGTTC 
CCCTGGTTCT CCACCTTCAT GCTCTGA 

 

Protein sequence

MSHALSSTPV DPDETAAPPP GVAAFNRALA RWIAPIELVT ALLMAAIVAM LFGGVVARYA 
FGRPITWIDE IVSFAFIWVA MLGAVLAMHR NEHLRLSMFV DRMSPRLREY VHAFALVAMA 
TFLMGLIGPA IEHVEVEWIV ETPALGIPGG LRVAAIAVGL VLMLAVVAIY SVRTVPKAAL 
ATAILGVGAF VGLCLWLSPQ FMQLGLFNIV IFLTGVVALC LFAGVPIAFC FGCGVMSFLA 
FSSNVPLIVI VGRIDEGMAN MVLVSVPIFV LLGCVLDATG MGKAIVDLLA SLIGHVKAGM 
SYVLLGSLFI VSGISGSKVS DMATVAPALF PEMRRRGNKQ PEMVALLATG AAMADTVPPS 
IVLIVLGSVA GVSIAGLFES GFVVAMVLLL SLLLLARWKA RHEDTSSVRR PPLKAIGKLA 
LVAAPALVLP FLIRSAVGGG IATATEVSTI AVLYAMLIGQ VLYGGLGWKR VYSMLVETAA 
LSGAILLILG TASAMAWAIT QSGLVQQMSQ VLTTLPGGWI AFMGVTVLVF LVLGCLLEGL 
PAVLLLAPIM FPIAKKLGIH EIHYSMVIVC AMNVGLMMPP IGVGFYVACR IGDAKPDDAM 
VAIWPYIAAL LGGVIVIAMF PWFSTFML