| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0772 |
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| Symbol | |
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| ID | 6163689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 832632 |
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| End bp | 835964 |
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| Gene Length | 3333 bp |
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| Protein Length | 1110 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641663523 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001789810 |
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| Protein GI | 171057461 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000000000467672 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTTGACG CCGACACCTC TGCCCTGATT TCAAGTGCGC CCGAACTCGA GGGTTTGGAC
CTTCCCGGCT TGCCCGAGCA ACTGACGGAC GCCTATACGT CGATCGTGAC GGCGCGTGTG
CGCCTGCGAG AACTCGCAGT CGGCAAGGCC CTGCCCGCCG ACATCGACGC ACTTGCTACG
CAAATGCGAA GGATTGCGTT CACGAACGAA GCCTTTGTCT CTGCGCTTCC GAACAGAGAA
AACCGGGCAT CAGCCGCGTT TGTCGCCGGC GCCGCTCATC ACGTTTCGCT GATGGCCGCC
CGGTTGGGGC GAACCGAGCA GCCAGAAACG AGATTGACTC TCGACTCGAT CGCCCCTGAG
GTCTCCGCCA CCTTGCTCTT CATGGTTGCG GAAGCGACGG CTGACTCCGC CGAAATGGCG
AAAACGATTG TCATTCCGAG CGGCAACATC ATTGAAGGTC GTCTCCTCAA CGCAATCGTC
AATCTGTCAA AGGGGGAACT GATCAACGTA TCCAACCTTG ATTTGCCGAG CGTCGACTTG
CTTCGGGCTG ACGACACAGG CGATCGAGGC GTTGCAGGGC TTCTGTATCT TCTTCTTCGG
GGGGTGCGAC AGCTTGCGCG GGAGCTACTT GGCACCCCAC AAACCGACGA CACGCTCGGC
AGTGCAGCGT CTGTGTTCCG ACGCATCAAG GATCTGTGCG TCGAACGGAT GGAAATCGCC
GGGGAGTCGA CCGCCCAGGG CGATTGCATG AAGCAAACGC CCTGGTCGAC CGCCGCCTTC
AGCGCATTCC CCGGACCACA TCATCTAGCG TCTCTTCTGA TGTCTGTTGC GGACAACCTG
GCTCCTGCTG CGGTCGTCAA CGTCACTCCC CCCGGGGGAG TCGACGGGCC GCGATGGGCA
ACCATGATGC GAAAGATTGC AAAGCGCAGA CCTTATCTGT GGCGCAATCA CCGGACGGCC
GTCGACTCGG GTTATCTTGA GACTGGCACT TCCTCCGCGG TGAGTTTCCC AACAGGTGCG
GGCAAATCGA CCCTTTCGGA GTTGAAGATC GCGGCGATGC TGTTGCAAGG AAAGAAGGTC
ATCTTTTTGG CCCCGACTTT GGCTTTGGTC GAGCAAACCG CTAGCGCGCT GAAGGTGACG
TTTCCCGAAG CGACTGTCCA ACAAGAACGG GGAGAAAACT TCGACTTTGA GGATTTCGTA
GGGGACCTTC CATCGGTCTC GGTCATGACG ACTGAGAGAT GCCTTGCGCT TCTTGGGTAT
GAATCTGAAG CTTTCTCGGA CGTTGGCCTA CTTGTGTTCG ACGAGTGCCA TTTGTTGCAT
GCAGCTGCTA TTGAAGCCAG TCACCGCGCG GTCGACGCCA TGCTCTGCGT CCTCAACTTC
GTGACCATCG TGCCAACGGC CGATCTTCTG TTGCTGTCCG CGATGATGAA AAACACGGGC
GAGATTGCCG CCTGGATCGC CTCGATGACG GGAAGGCCCT GCCTGGCGCT TGACCTGACG
TGGAAGCCTA CCCGCCAGGT TCGAGGGTGC GTGGTGTACG AGGCAGACCA CATCGAAACA
CTGAACGCAA GGCTCGGTAC GGCTCGTGCC ACCGCGAAGA CAAAAGGAGT GCCTACCGCT
GTTGCCAAAA CGCTGACCGC GCAGCCCCTG GGTCTGTTCT CACTGAGGCA GACTTGGCTC
TCGAAGTCTA GAGCACATTA CCGGCTGCTA CCCCTGCTGG AGGAAAAATT GGCCCTGGGA
ACCGGCAAGT CTCCCAGCGG AAAGATCTGG TACCTGACGC CCAATGGAAA CAAGCTGGCC
AGCGCTCTCG CCGTGGCAAC AGCAAGTCAG AATCTAAAGA CGCTGGTCTT CGTTCAAACC
ATTCCGTTGG CGAACGCGGC GACGAAAGCG GTCAATGGTG GCGCGATCGC CACCGAGATA
ACACTGACAA GCGCGGAGAG AGCGCTGCTC ACCGAAGCCA TCGAAGAGCT CGGGGACGTG
TCGCATTCCT ATGTTTCGAC GAATGATGCA GGGCGAGTTG AGGCTGCAGG CGTTTGTCAT
CACAGCCTCC TTCTGCATGC CGAGCGCCAG CTCCACGAAT CTTTGTTCAG GCGCTCAGAC
GGCGTTAAGG TCATGGTTGC AACATCGACG CTTGCGCAAG GGATGAACCT ACCCAGCGAG
GTTGTCATCA TCGGCGGCGA TAGCCGCTTC GATCGTGAGG CCAACAAGGT TCAACGGCTG
GAGGCGCATG AGCTCCTGAA TGCAGCTGGA CGAGCCGGTC GTGCAGGTGA GTCGTCCTAC
GGATTCGTGC TGGTGGTTCC GAGCAAAGTA GTGCACTTTC GGGACGGAAA GAACGAGATA
GGCAAGCACT GGGCGGATCT GCAAACCATA TTCGCGCAAA GCGATCAGTG CGTTGCGATT
GACGACCCAA TGACGGCGCT TCTCGACCAG TTGGAACTCT CGAAGGAGGA CCAGTCGGCG
TCGCTCAGGT ATCTCCTCAG CCGCCTGCCG GTTGGAGAAG ATGGAGACAA GGACAGCGCA
GCAAGAGCTC TTCTGCAGAA GTCCTTCGCA GCCTACCGAA AAAGGGCGGC AAATGATCTC
GCATGGATCG ACAGCCGCGT GAGTGCGGCG CTCGCCGCAC GAAAGGTCGA AGGTGCCCCG
ACCAACCCAA CCTGGGTCGA TCGACTTGCA GCTGCCACGG GGGTGTCGGC CGAGTTAATC
TCGCAGTTCG GCCAGGCCGT GAGCGACCTA CAGCTTCCCA ACGCTGGGTC CGTGGAGCAA
TGGCGAGACT CCTTTCTGGA ATGGCTGAAA GCCGTGCCGC AATTCGTTCC TTACCTCATT
CGCCCATCGA CGCTCGATGC CGTGCTCGGC AAGCCGTATA AGGCACTGAC CACTGACGCA
GAGAGAGGTC GGTACATCCT TGACTATGCT ACGGAGCCCC TGAAACGCTG GATGGCTGGT
TCGATCATTG CAGAGATCGA ACTGACGCTC GGAACGAACG CTGCCAAGCT CTGCAAGTGT
GACTTGGCGC GAGACTTCGT ACTGCGAATC GTCCCGGAAC TCGCCTTCGT TTTCGGCCTG
CCACTGCAGG TGGTGCGCGC GATCAAGAAA GGCACGGAGC AAGAGAAGGC GCTTCCAGGC
CTTGGGCTCT CTACGCTCAG CGGCTGTGTC CGCGGAGGTT TCGATGTCGC CGAGAAGCTC
GCCCTCCGTC AAGCGCTCAA CGTACGATCT TCGCGAACAG CAGTGCATAA AAGATATGCG
AGCTTGCATG CAGCCATCTC TCCCGCAACT AGTGCAGAGG ACTTTGGGAT GGCTGTCGGA
CGGCTCAGGA ACGCACTTTC AACATCTCGT TGA
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| Protein sequence | MFDADTSALI SSAPELEGLD LPGLPEQLTD AYTSIVTARV RLRELAVGKA LPADIDALAT
QMRRIAFTNE AFVSALPNRE NRASAAFVAG AAHHVSLMAA RLGRTEQPET RLTLDSIAPE
VSATLLFMVA EATADSAEMA KTIVIPSGNI IEGRLLNAIV NLSKGELINV SNLDLPSVDL
LRADDTGDRG VAGLLYLLLR GVRQLARELL GTPQTDDTLG SAASVFRRIK DLCVERMEIA
GESTAQGDCM KQTPWSTAAF SAFPGPHHLA SLLMSVADNL APAAVVNVTP PGGVDGPRWA
TMMRKIAKRR PYLWRNHRTA VDSGYLETGT SSAVSFPTGA GKSTLSELKI AAMLLQGKKV
IFLAPTLALV EQTASALKVT FPEATVQQER GENFDFEDFV GDLPSVSVMT TERCLALLGY
ESEAFSDVGL LVFDECHLLH AAAIEASHRA VDAMLCVLNF VTIVPTADLL LLSAMMKNTG
EIAAWIASMT GRPCLALDLT WKPTRQVRGC VVYEADHIET LNARLGTARA TAKTKGVPTA
VAKTLTAQPL GLFSLRQTWL SKSRAHYRLL PLLEEKLALG TGKSPSGKIW YLTPNGNKLA
SALAVATASQ NLKTLVFVQT IPLANAATKA VNGGAIATEI TLTSAERALL TEAIEELGDV
SHSYVSTNDA GRVEAAGVCH HSLLLHAERQ LHESLFRRSD GVKVMVATST LAQGMNLPSE
VVIIGGDSRF DREANKVQRL EAHELLNAAG RAGRAGESSY GFVLVVPSKV VHFRDGKNEI
GKHWADLQTI FAQSDQCVAI DDPMTALLDQ LELSKEDQSA SLRYLLSRLP VGEDGDKDSA
ARALLQKSFA AYRKRAANDL AWIDSRVSAA LAARKVEGAP TNPTWVDRLA AATGVSAELI
SQFGQAVSDL QLPNAGSVEQ WRDSFLEWLK AVPQFVPYLI RPSTLDAVLG KPYKALTTDA
ERGRYILDYA TEPLKRWMAG SIIAEIELTL GTNAAKLCKC DLARDFVLRI VPELAFVFGL
PLQVVRAIKK GTEQEKALPG LGLSTLSGCV RGGFDVAEKL ALRQALNVRS SRTAVHKRYA
SLHAAISPAT SAEDFGMAVG RLRNALSTSR
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