| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0731 |
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| Symbol | |
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| ID | 6163068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 778491 |
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| End bp | 780800 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663481 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001789769 |
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| Protein GI | 171057420 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.583794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTTCC CGCCCTGGGT CGGGCGAGGG GCGGGTCGTC CCGCCGCGGG CGGAGAGGGG
CCGGGTGCCC CGCCCAATGC GCCCAGGCGC GACCCGGTTC CGGGGGCGCA CGGCGCCAGC
GCCGCCTCTT TTGCGGCCCT GACGGGCAAG CTCGACTACC TGGACGAATC CGACGTCCGG
CGGGTGCGTG ACGCCTACCG CTTCGCCGAC GAGGCCCACC TGGGCCAATA CCGCGCCAGC
GGTGAGCCCT ACATCACCCA TCCGATCGCG GTGGCCGGCC TGTGTGCCGA CTGGAAGCTC
GACGCCCAGG CCATCATGGC CGCGTTGATG CACGACGCGA TGGAGGACTG CGGCATCACC
AAGGTGCAGC TGGTCGAGCG CTTCGGCGCC GCCACCGCCG ATCTGGTCGA TGGCCTGACC
AAGCTCGACA AGCTGCAGTT CTCGACCCGC GAGGAGTCGC AGGCCGAGTC CTTCCGCAAG
ATGCTGCTGG CGATGGCGCG TGATGTGCGC GTCATCCTGA TCAAGCTCGC CGATCGCCTG
CACAACATGC GGACGATGGA GGCGATGGCG GCCAACAAGC GCGGTCGCAT CGCCCGCGAA
ACGCTCGAGA TCTACGCGCC GATCGCGCAC CGACTGGGGT TGAACCAGAC CTATCGCGAG
CTGCAGGAGC TGTCGTTCCG CTTCCTGCAG CCGTGGCGGC ATGCCGCGCT GTTCAAGGCG
GTGCAGCGCG CACGCGGCAA TCGGCGCGAT GTCGTCGAGC GGGTGCAGGC CGAGGTCGAG
GCCGCGCTGT CGCAGGCGGC GCTGCCGGCA CAGGTCTACG GGCGCGAGAA GACGATCCAC
TCGATCTACA GCAAGATGCG CGAGAAGCAC CTGAGCTTCG CGCAGGTGAG CGACATCTTC
GGCTTCCGCC TGGTGGTGAC GACCTTGCCC GAGTGCTACC TGGCGCTGGG CGTGCTGCAC
CAGCTCTACA AGCCGGTGCC GGGCCGCTTC AAGGACTACA TCGCCATCCC CAAGGCGAAC
GGCTACCAGA GCCTGCACAC CACGGTGGTC AGCCCGGTGG GCACGGCGGT CGAGTTCCAG
ATCCGCACCG CCGCCATGCA TGCGGTGGCC GAAGCCGGCA TTGCCGCGCA CTGGATGTAC
AAGACCCAGG CCAACGGCCC CGACGCGCCC GACGCGCAGC ACCTGGGCAA TATGTGGCTG
CAGTCGCTGA TCGACATCCA GAGCGAGACC CGCGATTCGG CCGAGTTTCT GGAGCACGTC
AAGATCGACC TGTTCCCCGA GTCGGTCTAC GTGTTCACGC CCAAGAGCCG GATCCTGGCG
CTGCCGCGTG GCGCCACGGC GGTCGACTTC GCCTATGCGA TCCACTCGCG GGTGGGCGAT
CACTGCGTGG CCGCGCGGGT CAACGGCGAG CCGGTGGCGC TGCGCACCGA ACTGCGGTCG
GGCGACGTGG TCGAGATCGT CACCGCGCCG TCGGCGCGGC CCAATCCGGC CTGGCTGAAC
TTCGTGCGCA CCGGGCGGGC GCGTTCGAAG ATCCGCCACT ACCTCAAGAA CATGGAAGCC
GACGAGTCCT ACGAACTCGG CTTCAAGCTG CTGGCCCAGG CGATGCGCGC CGAAGGCCTG
CAGATGCCCG CCAGCGACGA GGACGCCACC GAAGCCGACA ACGCGCTGTG GCAGGCCCTG
GTGCGCTGGA GCGGCAACCG CCACCGGCGT GAACTGCTGG TCGACATCGG TCTGGGTCGC
AAGATCGCCA CCATCGTCGC CAAGCGGCTG GCCCGTCAGA TGGCCGAGGA CGGCCGGCGC
CCCGATGCGC TCACGCTCAG CATGGGCCGC TACGCCACCG ACAGCGACGC GCCGGCGCAA
GGCACGGTGG TGATCGACGG CAGCGAGAAC GCCACCGTGC AGCTGGCCAC CTGCTGCCGG
CCGATCCCGG GTGACGACAT CGTCGGCTAC CTGGGTCGCG GCGAAGGGCT GACCGTGCAC
ACGGCCGATT GTTCGGTCGG CAAGCGCCTG TTCGAGCGCG ACAGCGAACG CTGGCTGGCG
GTCGAATGGT CGGAGCAGCC GCTGCGCCAG TTCCAGACCG CCGTGGCGGT GCTGGTGCTC
AACGGCAAGG GCGTGCTCGG CGAGATCGCG CAGGCGGTCA GCCAGGCCGA GGCCGACATC
GCCCACATCG AGATGGACCC GGTGCAGAGC GGCCAGACCT GCGAGCTGCG CCTGCTGCTG
GCCGTGCGTG ACCGCCAGCA CCTCGCCGAC GTGCTGCGCG TGGTGCGCCG GTCGCCGTCG
GTCGAGCGGG TGGCGCGCAT CAAGGGTTGA
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| Protein sequence | MFFPPWVGRG AGRPAAGGEG PGAPPNAPRR DPVPGAHGAS AASFAALTGK LDYLDESDVR
RVRDAYRFAD EAHLGQYRAS GEPYITHPIA VAGLCADWKL DAQAIMAALM HDAMEDCGIT
KVQLVERFGA ATADLVDGLT KLDKLQFSTR EESQAESFRK MLLAMARDVR VILIKLADRL
HNMRTMEAMA ANKRGRIARE TLEIYAPIAH RLGLNQTYRE LQELSFRFLQ PWRHAALFKA
VQRARGNRRD VVERVQAEVE AALSQAALPA QVYGREKTIH SIYSKMREKH LSFAQVSDIF
GFRLVVTTLP ECYLALGVLH QLYKPVPGRF KDYIAIPKAN GYQSLHTTVV SPVGTAVEFQ
IRTAAMHAVA EAGIAAHWMY KTQANGPDAP DAQHLGNMWL QSLIDIQSET RDSAEFLEHV
KIDLFPESVY VFTPKSRILA LPRGATAVDF AYAIHSRVGD HCVAARVNGE PVALRTELRS
GDVVEIVTAP SARPNPAWLN FVRTGRARSK IRHYLKNMEA DESYELGFKL LAQAMRAEGL
QMPASDEDAT EADNALWQAL VRWSGNRHRR ELLVDIGLGR KIATIVAKRL ARQMAEDGRR
PDALTLSMGR YATDSDAPAQ GTVVIDGSEN ATVQLATCCR PIPGDDIVGY LGRGEGLTVH
TADCSVGKRL FERDSERWLA VEWSEQPLRQ FQTAVAVLVL NGKGVLGEIA QAVSQAEADI
AHIEMDPVQS GQTCELRLLL AVRDRQHLAD VLRVVRRSPS VERVARIKG
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